| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1312 |
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| Symbol | |
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| ID | 1169134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1367287 |
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| End bp | 1368528 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637343257 |
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| Product | TolB domain-containing protein |
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| Protein accession | NP_716932 |
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| Protein GI | 24372890 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCGGGA TTTATCGTTT ATCGCTTAAG TCAACCGAAG CGACGGCAGA ACGCTTATCC
TGCGATACCC GCTGTAACTA TGAAGACCGA GATTTAGCTT ACAGCCCCGA TGGGAGATGG
CTTGCGATAG CAAGGCGCTT TAGCAATATT TCAGAAGATA TTTTTATTAG AGATTTAGCC
AGTGCCCATG AAAAGCGGCT TACACAAGGG TTAGAAGATA TTCGAGGGTT AAGTTGGACA
CCTGATAGTC AGGCGTTAGT CTTCGCGACC GAAGATTCCG GAAGCAGTAA TGGATTTACT
CTCGATATTA ACACGGCGCA GATCCGCTCT CTGGATGTGG AAGGGATGAG TTATCCCAGT
AGCGTATCCG CTGAGGGGGA GCTGGTTTAT CACCAATATC ACCGTCAATT CCAGATGGCG
TATTTCTCCC TCGGGGATAA AGTGCCAGGC AGTTTATTCC CATTATTATA TTCTGGAGTG
AGCCACCGTA ATCCAGATTA TTCCCCTGAA GCAAAGCGGA TAGTATTTGT TTCTAGTGAG
ACGGGTTATA ACGAGATTTG GACCTCAGAT ATCAATGGCC AAAAACTAGA ACAACTTACT
CAACTTAAGT CACGAGTGGC CTATCCGCGC TGGTCACCCG ATGGGTCTAG AATTGCATTT
ATTGCCCCCG ATGATCGAAA TGAAGGTAAT CGCATTTTTA TTTTAGATTT AACCAATAAA
AACATTACCG CATTAGCGTC GAGTTATCAC AACCATGGTC GTCCAAGTTG GAATTGGCAG
GGGACTGCTG TGCTTGCCTC AACCGCTGAT GGTATTACGG AGTTTTACTT AGACAATCGT
GCTCCTCGGG TGATTAGTTC ATTGAGTATG GCGGTGGGTT TTGCCAAATC GGCTACCGAG
TTGGTTTTTA GCCGCGATGG CGAGAATGGA CTGTGGCAGA TTAATTTAAC GCAGCCCGAA
CACGTTGAGC AGTTAATCTC AACCGACGCA TTTCGCGCGG GTAATAACTG GGTGCTTACC
GCAAGCGGAG TTTACTTTAA ATCGAGTAAT GGTCACGAGC AGCTATTGAA TTATTGGGAG
GCGAGCAGTC AACAGGTCAC TTCACTCTTG AGAGTGCCAC GTTCGAGCTT AAGCGGTTTT
GGCTCCATGA CGTATATTCC GGAGGCAAAC CGCTTAGTGA TGACGCTCGA TGGCTTCCCA
CAGCGGGACA TTATCCTGCT AAAACATAAG CTGTTGAAGT AG
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| Protein sequence | MGGIYRLSLK STEATAERLS CDTRCNYEDR DLAYSPDGRW LAIARRFSNI SEDIFIRDLA
SAHEKRLTQG LEDIRGLSWT PDSQALVFAT EDSGSSNGFT LDINTAQIRS LDVEGMSYPS
SVSAEGELVY HQYHRQFQMA YFSLGDKVPG SLFPLLYSGV SHRNPDYSPE AKRIVFVSSE
TGYNEIWTSD INGQKLEQLT QLKSRVAYPR WSPDGSRIAF IAPDDRNEGN RIFILDLTNK
NITALASSYH NHGRPSWNWQ GTAVLASTAD GITEFYLDNR APRVISSLSM AVGFAKSATE
LVFSRDGENG LWQINLTQPE HVEQLISTDA FRAGNNWVLT ASGVYFKSSN GHEQLLNYWE
ASSQQVTSLL RVPRSSLSGF GSMTYIPEAN RLVMTLDGFP QRDIILLKHK LLK
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