Gene SO_1298 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1298 
SymbolgspB 
ID1169118 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp1348811 
End bp1349917 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content42% 
IMG OID637343242 
Productgeneral secretion pathway protein B 
Protein accessionNP_716919 
Protein GI24372877 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGCTG GTGATCCTAG CCATGAAAAA TTAGTTGCCC ATCAACTCAA TGAAAACTTG 
CTTGAAATTG CTATGCTATG GTTGTTTTTG ATGTCGACCA TGATCTTTGT GGCTTATCTT 
AACGCTAAAG GAATGACTCA AATCATGGTG CAGAAGCTCT TTCCACAGCA GGTTTCTGTG 
CGAATTTTAA TGCTCCAAGT CGGCCTGTTT TCACTCGTAC TCTCAGCATT TTGTGATAAC 
GTCACCGCTA CACTGGTTTC TTTAGGCTTG CTAACTACCT TCAAACTCGG TAAACAAATG 
CGCCGCAGAA TGGCAGTATT GATTATTTTC GCGGTGAACT CAGGTGGGGT GGCATTAATC 
ACGGGGGATG TAACCACCCT GATGATCTTC TTAGCTGGCC ACGAACATAT CTCTGAACTA 
TTGATGTTAT TTATCCCCTC AGCAGTGAGC GTAATTTTAT TGGCAACACT TTTTTCGCTA 
AAAGCTGAAG GCATCGTCTC AACAACCCCA ATTAAACATA GTTATCAAAC GGTTGAACTA 
TTGATTGCCC TCGTGTTCTT CTTCACGATT TTAATAACCT TGTGA
 
Protein sequence
MSILLDAVTR NKQQQSSALP DAVLTPRPSY PTPRKAAFPV AKLSLLAVAI ALGVGGAWGV 
ANWQQSSSMA VLKANDAHKS NTYQGAVIAE HASKTGSDAV VTQTQINREL SVSATSEPEV 
SPDTLPQGAR GTAGFRLAGK VALPREQVLN EQPLSMQGYV NSNMSSAQTL SANPATTDPS 
YDDYLATSAA LDETVRRQSS MENMVEPQEV AEPEPIMLGA SANGQGLATL EALRQQVNAA 
AVDVGLDTTQ SRKDDELVAT FQDALKDVEY VNAAKTPVTE PKLDPIPKTE NDDIPKYGQL 
PAGLQLQVPE FNIVAHVYST DASQRWLNVD GAELQEGDMI VGKLKIIAIR PRDIVLDIQG 
TQFRVPAI