Gene SO_1228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1228 
SymboltorR 
ID1169054 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp1276228 
End bp1276938 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content45% 
IMG OID637343179 
ProductDNA-binding transcriptional regulator TorR 
Protein accessionNP_716851 
Protein GI24372809 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCTATA GTGTGCTGGT TGTTGATGAC GAAGTGGTTA TTCGTGCGCG ATTGAAGGGA 
TATTTTGAAA AAGAAGGTTA TCGCGTGGTT GAGGCTGCCG ATGGCGAGCA AATGTGGTAC 
GAGTTTAATC GTCAACATAT CGATTTGATC ATGCTAGATA TCAATTTACC GGGTGTTGAT 
GGTTTGAGCT TAACTCGCGA GTTACGCAGC CGCTCCCATG TGGGGATTAT CTTAGTTTCT 
GGCCGTGATG AATCCATTGA CAAAATTGTT GGCCTCGAGA TGGGCGCCGA TGATTATGTG 
ACTAAACCCT TCGAACTACG GGAGCTGTTG GTAAGGGTAA AAAATCTGCT ATGGCGGATT 
TCTTTGGTAA AACAAGCCGA GCAAGCGCTG GTGCAGGAGT TATCACAGCC CGATGATTTG 
ATAAGTTTTG AAGGTTATCA ACTTGAATTA AACAGCCGGA AATTGCGCCA AGGGGAGGAA 
CTTATCAAGC TCACTAAGGC CGAATTTGAG TTATTAACCG TCTTTGTCTT ACATCCACAA 
CAGGTGCTTT CCCGCGAACG TTTAATGCAG CAAACCAGTC ATCGTAATCA GGATGTGAAT 
GACAGAACGA TAGATGTCAT CATCCGCCGT TTGCGTAATA AACTCCATGC CGAACTTTTT 
GTTACTGTTC ATGGTGAGGG GTATTTATTT GCCGCGAAGG TGGATGACTA A
 
Protein sequence
MAYSVLVVDD EVVIRARLKG YFEKEGYRVV EAADGEQMWY EFNRQHIDLI MLDINLPGVD 
GLSLTRELRS RSHVGIILVS GRDESIDKIV GLEMGADDYV TKPFELRELL VRVKNLLWRI 
SLVKQAEQAL VQELSQPDDL ISFEGYQLEL NSRKLRQGEE LIKLTKAEFE LLTVFVLHPQ 
QVLSRERLMQ QTSHRNQDVN DRTIDVIIRR LRNKLHAELF VTVHGEGYLF AAKVDD