Gene SO_1062 details

Gene Information

• Locus tag: SO_1062
• Symbol: def-2
• ID: 1168899
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1102263
• End bp: 1102808
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637343018
• Product: polypeptide deformylase
• Protein accession: NP_716689
• Protein GI: 24372647
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTAAAG ATGAAATGCG ACAAACACCC AATAAGCCAC TGCCGATAGC CGTGGTGGGG 
GAAGCCATTT TAAAACAACA GGCGATTGAA GTACGTGACT TTGATGACAC ACTCAGTCAG 
TTAGCATCGC AAATGGCAGC AAGCATGGTG GAGGCAAAAG GCGTCGGCAT TGCCGCCCCT 
CAAGTCCATA GCCCACTCGC CCTGTTTATC ATGGCCTCAA GACCAAACGA GCGTTATCCC 
GATGCCCCCT TAATGGAACC ACTTGTGGTG GTTAACCCAC AGATCGTGTT GAGATCTTTG 
CAACTTGAGA AGGGGGAGGA AGGTTGTTTA TCTGTCCCTG GGCAACGGTT TACCATTTGG 
CGCCCTCAGA CGATTGTTGT GCGCTATCAA AACCTCGCAG GACAGTGGCA ACACTCTGAG 
TTAACAGGTT TTATCGCACG CATTTTCCAA CATGAATTTG ATCATCTTCA AGGGATCACT 
TTGCTTGAGC GTTCACAAAT GCCAGAGCAA AAACTAATGG CGCAAGAAGG TAAACCACAG 
GCATGA 

 

Protein sequence

MFKDEMRQTP NKPLPIAVVG EAILKQQAIE VRDFDDTLSQ LASQMAASMV EAKGVGIAAP 
QVHSPLALFI MASRPNERYP DAPLMEPLVV VNPQIVLRSL QLEKGEEGCL SVPGQRFTIW 
RPQTIVVRYQ NLAGQWQHSE LTGFIARIFQ HEFDHLQGIT LLERSQMPEQ KLMAQEGKPQ 
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