| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0882 |
|---|
| Symbol | |
|---|
| ID | 1168729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 910851 |
|---|
| End bp | 912452 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637342852 |
|---|
| Product | GMC family oxidoreductase |
|---|
| Protein accession | NP_716513 |
|---|
| Protein GI | 24372471 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCAATCG TAGATCCCAT AGTGACAGGC TTAAATGCCG GTTGGCTGCA CACTGATGCG
AGTCAGCTAC AAGCAAATCA ACAATTTGAA GCCGATGTAG TGATTGTGGG CACGGGCGCC
GGCGGCGGTG TGGCGGCGGA GATCCTCACC CAAGCTGGAC TCAGTGTGAT CATGATTGAA
GCGGGGCCGC TTAAATCCTC CAGCGATTTT AATATGGAAG AGCGAGTCGC TTATCCGAAT
TTGTACCAAC AGGCTGCGGC GATGAAAACC GCTGATAAAG CGATCGGTAT CTTCCAAGGC
CGAGCCGTGG GTGGCTCGAC GACCATCAAT TGGACCACCT CGATTCGTAC GCCAAAGGAA
GCATTAGCCT TTTGGGCGCA GCATAAATCC GTTGCAGGAC TCGACCCTGA AGCCTTAGCG
CCTTGGTTTG ATCAAATGGA GCAACGGCTC AATATTCATG AATGGAATTA TGAACCTAAC
CGTAATAACG GCGCGCTCAA GCAAGGGTGT ATCAACCTAG GTTGGGATTA CACTGTGATA
AAGCGCAATG TTGCAGGTTG CTGGAATACT GGCTATTGCG GCATGGGCTG CCCTGTGAAT
GCCAAACAGT CGATGTTAGT GACTACCATT CCGAGCGCGT TAGAAAAGGG CGCGCAGCTT
ATCAGCCGCG CCAAAGTCGT TAAGATAGAA CATCATAATG GCCAAGTTTT TGCTCTTAAG
GCGCAAGCGT TAGATGTGAA TTTAAGGCCG ACAGCGGTCG AACTGCTCTT TAAAGCTAAA
CACTATATTT TAAGTGCGGG CGCGATCCAT ACGCCGACGC TAATGATGCG CTCCGAGGTG
CCCGATCCCC ATCAGCTGTT GGGTAAGCGC ACCTTTTTAC ACCCCACAGT GCTGTCTGGC
GGGGTATTTG CCGATACTAT TAACGCCCAT AGCGGCGCAC CTCAGTCTAT CTATTCGGAT
GAATTTGTGT GGAAAAATGG TGCTGATGGC GAGCTAGGTT ATAAGCTGGA GGTGCCGCCA
GTTCATCCTA TATTAATCGC CTCTAAGACC ATAGGTTACG GCGTGAGCCA TGCCGAATTG
ATGGCGCAGT TTAATCAGTT GCAGGTGACG ATCGCCTTGA TTCGCGACGG TTATCATCCC
GACAGTCAAG GCGGGCAAGT GCATTTAACC CCAACCGGCT TTAGTTTAGA TTATCCATTA
ACCGACGCCT TTTGGCGGGC AGTGCGGCGA GCCTATGCCA GTATGGCTGA ATTGCAATTT
TCGGCGGGCG CTTTAAAAGT ACTGCCTATT AGTGATGGTA TGCCTTATCT GTCCTCATGG
AAGGAGGCGA AAGAGAGCAT AGCGCAAATG GACTTAGCGC CACTAAAGAC TGTGGTGGCC
TCGGCACATG TGATGGGCGG CTGTCCACTC GGCGAAGATG AAAAGCTTTC TATGGTCAAT
AGTTATGGTC AATCACATTA TCTTAATAAT CTGTCGGTGA TGGACGGTTC TATCTTCCCG
ACCAGCTTAG GTGCAAACCC ACAGTTGTCG ATTTACGGCA TCACGGCACG TAATGCGACG
GCACTGGCAC AAAAGCTCAA AGATGGCCGA GAGCCACAAT AG
|
|---|
| Protein sequence | MAIVDPIVTG LNAGWLHTDA SQLQANQQFE ADVVIVGTGA GGGVAAEILT QAGLSVIMIE
AGPLKSSSDF NMEERVAYPN LYQQAAAMKT ADKAIGIFQG RAVGGSTTIN WTTSIRTPKE
ALAFWAQHKS VAGLDPEALA PWFDQMEQRL NIHEWNYEPN RNNGALKQGC INLGWDYTVI
KRNVAGCWNT GYCGMGCPVN AKQSMLVTTI PSALEKGAQL ISRAKVVKIE HHNGQVFALK
AQALDVNLRP TAVELLFKAK HYILSAGAIH TPTLMMRSEV PDPHQLLGKR TFLHPTVLSG
GVFADTINAH SGAPQSIYSD EFVWKNGADG ELGYKLEVPP VHPILIASKT IGYGVSHAEL
MAQFNQLQVT IALIRDGYHP DSQGGQVHLT PTGFSLDYPL TDAFWRAVRR AYASMAELQF
SAGALKVLPI SDGMPYLSSW KEAKESIAQM DLAPLKTVVA SAHVMGGCPL GEDEKLSMVN
SYGQSHYLNN LSVMDGSIFP TSLGANPQLS IYGITARNAT ALAQKLKDGR EPQ
|
|---|
| |