| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0560.2 |
|---|
| Symbol | |
|---|
| ID | 1168431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 582643 |
|---|
| End bp | 583932 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637342554 |
|---|
| Product | small-conductance mechanosensitive channel |
|---|
| Protein accession | NP_783458 |
|---|
| Protein GI | 28275201 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCT CACTGATATT ACTACTCGCC CTAAGCTTTC CCCTGCTGAT AAATGCCAAA
GTATTCGCTG CAGATCCAGT CCCCGTCACG ACCACTCAAA CCACTTCGGT TTCAAACGAT
ACTGAAGCTG AATTAACGAC GCTACAAACT GCCATTAAAG AAGATATTGC GCGCTTAGCT
CACTACCAAG GTGAATTGCG CACGATTGCT GAATATCGCA TTCAAAATAA GTCCTTACAG
TTACGTAATA AGATTAAAAC ACTTTTAGAC GATGACAGTT ACGACAAAGC CTTAATATTA
CCCCTCGTTC AAGAGCAATT GCTTTTTAAT CAGAAAATTA ACGACTACTT TAATGATATC
GTCAGCAAAT TATCCCAGAA ACTCGGTACA CCGGATGATG AGGCTACCTT ACTTGAGATC
TCAAAGCGTG AACTCGACAA AGACAATAAT TACAAGCAAC GACTTGAGAC CCTAGACTGG
CTGAGTCAGC TTGGCCAAGA TGTGACGGCA GAAAAAGCAC AGCTCACCCA AATCCTGCTT
AGCCGTGCAG ATAACTTTGA TAGCTTTGTC ACTTATACCC AGCAACAATT ACAAAATGCG
GTGAATGACG CCACCAATGC AGGGAAAGAT GCTACCTCAG CGCAAACCAG TCGTGTGATA
CAACTAAAAG ACCGTTTGGC GCAAAATAGC CTTAGCCTCA GCATAGATAT CGAACTACTT
GATGCACTAG GGCAAAACAC CGCCATGCTG AAAAAGACTT TGTTTAGCAT CTCCGGTGAT
ATTACGCAGG ATGTGTTAAG CGTTGATGTG GCATCGAGCT TAATCAAGCA ATGGCTAAAT
ACTGCTAAAG ATCAAGCCAT TAACCACGGG CCTACCTTAG TCTTTAAATT ATTTATCTTC
TGTCTGATCC TATTTGTCGC TAGCCTTGTG GGCAAACTGG TGAAAAAGAT AGTGAGTAAT
ACAGTTAGCA ATTCTAAGTT AAATTTCAGT AAGTTACTGC AAGACTTTTT TACATCACTC
TCGGGTAAGG CTGTATTTAC TATCGGTTTG CTGATTGCTT TATCCCAGCT TGGTATCGAA
CTAGGCCCCC TGCTGGCAGG TTTTGGTATT GCCGGTGTGA TCATCGGTTT TGCCCTGCAA
GACACCCTTT CCAACTTTGC TTCAGGCATG ATGATTTTAA TCTATCGCCC CTACGATGTC
GGCGATTTGA TTAATGCAGC GGGCGTGTCG GGGCGCGTTA GCCATATGAG CCTAGTCTCT
ACAACCATTA AAACACTAGA TAATCAATGA
|
|---|
| Protein sequence | MRRSLILLLA LSFPLLINAK VFAADPVPVT TTQTTSVSND TEAELTTLQT AIKEDIARLA
HYQGELRTIA EYRIQNKSLQ LRNKIKTLLD DDSYDKALIL PLVQEQLLFN QKINDYFNDI
VSKLSQKLGT PDDEATLLEI SKRELDKDNN YKQRLETLDW LSQLGQDVTA EKAQLTQILL
SRADNFDSFV TYTQQQLQNA VNDATNAGKD ATSAQTSRVI QLKDRLAQNS LSLSIDIELL
DALGQNTAML KKTLFSISGD ITQDVLSVDV ASSLIKQWLN TAKDQAINHG PTLVFKLFIF
CLILFVASLV GKLVKKIVSN TVSNSKLNFS KLLQDFFTSL SGKAVFTIGL LIALSQLGIE
LGPLLAGFGI AGVIIGFALQ DTLSNFASGM MILIYRPYDV GDLINAAGVS GRVSHMSLVS
TTIKTLDNQ
|
|---|
| |