| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0415 |
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| Symbol | |
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| ID | 1168292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 430085 |
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| End bp | 431356 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637342417 |
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| Product | type IV pilus biogenesis protein PilC |
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| Protein accession | NP_716053 |
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| Protein GI | 24372011 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTACGG CAACGACAGT AAAAAAGCCT CGCCCAAAAA AGATTGAGCA AAAAAGCCAA
CCTAAAATTT ATACCTTTGA ATGGAAAGGT GTTAACCGCG ATGGCCAAAA AACCAGTGGC
GAGCTGCGGG GTGCTTCTGC GGCAGAGATC CGCAGCCAGC TAAAATCCCA AGGGGTAAAT
CCTAAAACGG TACGCAAACA ATCGGCCGCC CTATTTAAAT TAGGTGATCC CAAAATTACC
CCAATGGATA TCGCCATGGT GACTCGGCAA ATTGCCACCA TGCTTGCCGC TGGGGTACCG
TTAGTCACCA CCATTGAATT ACTGGGCCGC GGCCATGAAA AAGTCAAAAT GCGTGAGCTA
CTAGCAACGA TTCTTTCAGA AATCCAATCG GGTATTCCAT TGTCCGATGC GCTGCGCCCC
CATCGACGCT ATTTTGATGA TCTCTATGTC GACTTGGTCG CCGCAGGTGA GCATTCGGGT
TCCTTGGATG TGGTATTCGA TCGTATTGCT ACCTACCGCG AAAAATCTGA GGCCTTAAAG
TCAAAAATCA AAAAAGCCAT GTTTTATCCT GCTGCGGTAG TGATTGTGGC CATTTTAGTG
ACTGCATTAC TGTTACTCTT TGTGGTGCCA CAATTCGAAG ATATTTTTAA GGGCTTTGGG
GCCGAGTTAC CCGCTTTTAC CCAATTAGTA CTGCAAATCT CCCGAGGCTT ACAATCCTCT
TGGTATATCT TCTTAGGTGC AATTGTGGCT GGCGTATTTT TATTTGTCCG CGCCCACCGA
AACTCTCAAA TAGTGAGGGA TAGAGTGGAT GAAGCCGTCT TAAAAATTCC GGCGATTGGG
CCGATTTTAC ACAAAGGTGC TATGGCACGT TTTGCCCGCA CCTTAGCCAC CACCTTTGCC
GCTGGCGTAC CATTGATTGA TGGTTTAGAG TCCGCGGCGG GGGCATCGGG TAATGCGGTA
TATCGTAAAG CCATTTTAAA AATCCGTCAG GAAGTGATGG CGGGGATGCA AATGAACGTG
GCCATGCGAA CCACTGGGCT GTTCCCCGAT ATGCTGATCC AAATGGTGAT GATTGGCGAA
GAGTCAGGCT CACTCGATAA TATGCTCAAT AAGGTTTCAA CCATCTATGA GATGCAGGTG
GATGATGCCG TGGATGGTTT ATCCAGCTTG ATTGAACCTA TTATGATGGT GGTGATTGGT
ACTGTCGTCG GCGGCCTTAT TGTTGCTATG TATCTACCCA TCTTCCAAAT GGGTAAAGTA
GTTGGCGGCT AG
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| Protein sequence | MATATTVKKP RPKKIEQKSQ PKIYTFEWKG VNRDGQKTSG ELRGASAAEI RSQLKSQGVN
PKTVRKQSAA LFKLGDPKIT PMDIAMVTRQ IATMLAAGVP LVTTIELLGR GHEKVKMREL
LATILSEIQS GIPLSDALRP HRRYFDDLYV DLVAAGEHSG SLDVVFDRIA TYREKSEALK
SKIKKAMFYP AAVVIVAILV TALLLLFVVP QFEDIFKGFG AELPAFTQLV LQISRGLQSS
WYIFLGAIVA GVFLFVRAHR NSQIVRDRVD EAVLKIPAIG PILHKGAMAR FARTLATTFA
AGVPLIDGLE SAAGASGNAV YRKAILKIRQ EVMAGMQMNV AMRTTGLFPD MLIQMVMIGE
ESGSLDNMLN KVSTIYEMQV DDAVDGLSSL IEPIMMVVIG TVVGGLIVAM YLPIFQMGKV
VGG
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