| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_5033 |
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| Symbol | |
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| ID | 3520532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 5352906 |
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| End bp | 5353928 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637287472 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_271672 |
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| Protein GI | 71280069 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCTC GTCTTTTTAG ATTGCTTTCT GTTCTATGCT TTACCAGTTT GTTCTTAAAT
GCGCCTATTT ATGCGCAAGA ACTTGAAACC AAAATAATTA AAGCTGAACC TATTGTTAAG
AAGATTAACC GCACGGGCAA ATTAACCTTT AAGCGAACGT TAAATTTATC TTTTAAAAGT
AGTGGTTATC TCGAAGAACT TACTATTGAT GAAGGTGATA GTTTTATTAA AGGCCAGTTA
TTAGCTCAGC TTGACAGCGA AGAACTTACC GCGGAAAAAA ATGCTAGTTA TGCACGTTTG
TTACAAGCAA AACGTGAAAT TAAGCGCATT AAAACGCTGC TAAGTAAAAA ACTAAGCTCA
CAACAAGCAT TAGATGACGC TATCACCTCA GTTGAAACCA CACGTGCCCG CCATAAAATA
GCCCAATACA ATCTCACTAA AGCGCAGTTA ATTGCACCTT TTGATGGTGT AGTACTCGCT
CGATATACTG ATTTAGGTGA ACTGCAAAGC CCTAGCCAAA GTGCTTTAAA AATAGCCGCA
GTAGAAAATA ATTTAGTCGT TCGTGTCGCG TTAACTGCAT CGGAAGTTAA TCTAGTTAAT
TTACAGCAAA GAATAGATCT TAATTTAACG CAATATGGTT TAGTCACTGG CACTGTGAGT
AAGGTTCCAG CTATTGCAGA TCAACAAAGC CATTTATTTA CTATTGAAGT TTTATTAGAA
AATTTAAAAG TGAATCAAGT TGTTGTTGGA CAATTAGTTC ATGTATTAGC TGAAGTCATG
ACTGATACGT TTTCCTATCG ATTACCGCTT GAGGCGCTAA ATAGTGTTGA TAATCAAGGG
AAAGCGTTAG TTATGGTGTT AGATACTAAC GCAACAGAAA CCAAAAATTA TCGTCAGCAA
GAGTTTTTGA TTAAACAGCT CTCAAATGAA TATATCTATT TATCTGCTCA ACCAAGTTCT
CCTCCCTTAA CTATTGTCAC GCGGGGCTGG CAACATCTAG CATTAATTGA AAATAAGCCG
TAG
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| Protein sequence | MKPRLFRLLS VLCFTSLFLN APIYAQELET KIIKAEPIVK KINRTGKLTF KRTLNLSFKS
SGYLEELTID EGDSFIKGQL LAQLDSEELT AEKNASYARL LQAKREIKRI KTLLSKKLSS
QQALDDAITS VETTRARHKI AQYNLTKAQL IAPFDGVVLA RYTDLGELQS PSQSALKIAA
VENNLVVRVA LTASEVNLVN LQQRIDLNLT QYGLVTGTVS KVPAIADQQS HLFTIEVLLE
NLKVNQVVVG QLVHVLAEVM TDTFSYRLPL EALNSVDNQG KALVMVLDTN ATETKNYRQQ
EFLIKQLSNE YIYLSAQPSS PPLTIVTRGW QHLALIENKP
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