| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4484 |
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| Symbol | |
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| ID | 3519555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4727215 |
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| End bp | 4728447 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637286924 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_271132 |
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| Protein GI | 71277955 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.878232 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCACTA AAAAACAAAT TATTATACCT ATCGTCATAT TAGCTGCAGG CATTGCTGCA
ATGGCAATAT TTTCTAATAT GAAAAAACCA CCAGAAGAAA AAGAGAAAGT TGATAAAACT
CCTATCGTTG CCGTTCAAAA TATATCCGTT GCACCAATGA CGCTAGAAGT AAACTCATAC
GGTATGGTAA AGCCTAAATA TGAAACAGAA TTGGTTGCTC AGGTTAATGG TGAAATTGTT
GAATTGAATG ATGTTTTTGT TCGGGGTGGC TTTGTCAAAG AAGGTCAACT ATTAGCGCGT
ATTGATCCGA GTGATTATCA AGCTGCCTTA ATTGATGCTC AAGCTAAAAT GGCTACGGCT
AGAGCTGCAT TAGAAACAGA GCTTGCTCAA GGTAAAGTAG CTGAACGTGA GTGGAAACTA
ATCACAAATA CTTCACCAAC TGAGTTGAGT TTACGTAAAC CACAATTAGC GCAAGAATTA
GCTCGAGTTA AAGCAGCACA AGCCTCTGTT TTAAGAGCTG AGCGTAATTT AGAACGCACA
GAAATTCGTG CGCCGTATAA TGCAATGATT GACAGTCGGA ATATTGGTTT GGGTTCATTT
GTTGGTGTTG GTAGTAAAAT TGGGCATGTA TTGGGTACCG CAACTGCAGA AATTCGTTTG
CCAGTTGCGG ATAATCAATT AGCCTTTTTA GTTAAAACTG AGTCCACTGA ACAAGGTGTT
AATGCACCAG TTAACCTTAT TGGCACTTAC GCAGGACAAG ATACACAATG GCAAGCAATT
ATAGCGCGCA GTGAAGGTGT CATTGATAGC AAAAGTCGCA TGAGTTACTT AGTGGCTGAA
ATTAACGATC CTTATTTATT AAATAGTTCA AGCGATAGCA GTGATGTACC GTTACGCTTT
GGTAGTTACG TGAATGCTAA AATTATGGGT TATGACATCA GTCAAGCAAG CTTAGTGCCT
CGCTATTTAG TGGTAAACGG TAAAGTAGCT CTCTTAGATA ACGAGTCAAA ATTACATTAT
GCTGTAATTG ACATTGTTCG CCAGCAAGGC AGCGATGTTA TTGTTACTAA TGGTCTACAA
GATGGTGACC AACTTATTGT ATCTGCGCTA GATTATCCTG TAGATGGTAT GAAATTGGCT
GTAGCCTCTG ATGTTCTGCA ATTGGAAGAA AAAGACATCG AAACTGAGAA AAGTGAAACT
CAAATGGCGA ATAATATAGA GTCAGGAGAG TAG
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| Protein sequence | MATKKQIIIP IVILAAGIAA MAIFSNMKKP PEEKEKVDKT PIVAVQNISV APMTLEVNSY
GMVKPKYETE LVAQVNGEIV ELNDVFVRGG FVKEGQLLAR IDPSDYQAAL IDAQAKMATA
RAALETELAQ GKVAEREWKL ITNTSPTELS LRKPQLAQEL ARVKAAQASV LRAERNLERT
EIRAPYNAMI DSRNIGLGSF VGVGSKIGHV LGTATAEIRL PVADNQLAFL VKTESTEQGV
NAPVNLIGTY AGQDTQWQAI IARSEGVIDS KSRMSYLVAE INDPYLLNSS SDSSDVPLRF
GSYVNAKIMG YDISQASLVP RYLVVNGKVA LLDNESKLHY AVIDIVRQQG SDVIVTNGLQ
DGDQLIVSAL DYPVDGMKLA VASDVLQLEE KDIETEKSET QMANNIESGE
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