| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4172 |
|---|
| Symbol | |
|---|
| ID | 3522671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4390579 |
|---|
| End bp | 4391874 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637286614 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_270823 |
|---|
| Protein GI | 71282198 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA TCAGTCACAT CATATTCATA ATATTGGTTG TCCCGTCGAT TTGTATATCG
ATGTGTCAGG CGAATGAGCT TGCTAAAGTA CCTGTTTTAG ATGAGGGAGA AACTAAAAAA
AGTAACTTGT TGCATATTCC ACCAACAAAA ATGTTACCCA TCAACCCTGA ATTACTCTTC
TTAATTACAC AGTTAAAACT AAAAAGTATC GAAAAGAATA AAATTGAAAT AGCACTTGCA
CAGCTGACTT TATCCACAGC ACCATTAAAC CCTGCAGAGC AATATTTACT TTTAGTCGCG
CAAGCGTTAT TGAAAGAAAA TGCAAATGAT AAAAATTCTG AGAGTCGTAA CAGTAATAAT
AGCAGTAATA TTATTACTGT TTTGGAACAG GCAGGAAAGT TATCGGAACA AATTTCTGAA
CAGCAATTAG CACAACCTGA ATTTTTACAG CTGCATTTAT TATTAGCCGA TCACTACGCA
AGACAAAGAA AATATGATTT AGCTTACCTA GAAAAAAAAT CCTATTTAAC AACATATAAT
ATTTATCGTA AAAATAAGCG TATAGCTATG ATTGCCTCTT TAGAGCAATC ATTTGAAGTT
AAAGATAAAA AAGCCAATAA CGCATTGATG GAAAGTCAAA ATAAGTTAAA AATTCGCCGA
GTTGCTGAAG TACAAGACGA AAAAGCTGCG CAGCAATATA ATTTCACGCT GATTATCAGC
ACAGGTATCG TCTTTGTATT GATTTTATTC AGACAGTTAA GAATACGTAA TAAACTTATC
CTCTTGACTC GAACAGACGC TTTAACTGGC TTATCAAACC GTAATACTTT GTTTAAACAC
GGTGAGAAAA TGGTGTCTAG TTTTACAGAA CAGCCAGAAG AGTTATCGAT ATTATTGTTA
GATTTAGATC ACTTCAAAAA AATTAATGAT AGTTTTGGCC ATGATATTGG CGATGAAATC
TTAATGGCAG TATCAGATTT AGTTAAAGAA ACCATGCGTT CTCGTGATTT GCTTGCTCGT
TTTGGCGGCG ATGAGTTTGT TGCATTATTA CCTTTTGCAG ACAGCAATAA AGCAAAAGCT
ATTGCCATGC GTATCAATGA AAAAATTTCG CAGTATGATT TTTCATCTTT AGTTTTACAA
AGTAGGGTAA CTTTCAGTAT TGGTGTTGCA ACGATGGCTG ATAATAAAAT GAGCTTCGAC
GACTTATTAC ATGATGCCGA CTTAGCTATG TATCAAGCGA AAGATCAAGG CCGAAATACC
GTTATTTGTT ATCAAAATAT CTCTGTAGCA GGATGA
|
|---|
| Protein sequence | MKFISHIIFI ILVVPSICIS MCQANELAKV PVLDEGETKK SNLLHIPPTK MLPINPELLF
LITQLKLKSI EKNKIEIALA QLTLSTAPLN PAEQYLLLVA QALLKENAND KNSESRNSNN
SSNIITVLEQ AGKLSEQISE QQLAQPEFLQ LHLLLADHYA RQRKYDLAYL EKKSYLTTYN
IYRKNKRIAM IASLEQSFEV KDKKANNALM ESQNKLKIRR VAEVQDEKAA QQYNFTLIIS
TGIVFVLILF RQLRIRNKLI LLTRTDALTG LSNRNTLFKH GEKMVSSFTE QPEELSILLL
DLDHFKKIND SFGHDIGDEI LMAVSDLVKE TMRSRDLLAR FGGDEFVALL PFADSNKAKA
IAMRINEKIS QYDFSSLVLQ SRVTFSIGVA TMADNKMSFD DLLHDADLAM YQAKDQGRNT
VICYQNISVA G
|
|---|
| |