| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3988 |
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| Symbol | |
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| ID | 3518667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4182753 |
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| End bp | 4185590 |
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| Gene Length | 2838 bp |
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| Protein Length | 945 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637286434 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_270646 |
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| Protein GI | 71277789 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.647159 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTTT CTTTAACGAA TTTTAACGGT AATAATTTTC GCCTTAATAA ACTAACTATC
GCCTTAGCGG GCAGTTTAGC GTTATTAACA GCACCTTTAA GTTGGGCAGA CAGTGTTATT
GAAGGGCGAG TAACCGACGC AAGTAACAAG GTTTACTTTC AAGGCGCCCA AGTGCAGATA
AAAGAGTTGG ATTTAACGGT AATTAGTGAA CGTGATGGAT CCTTTCGTTT TGCTAAATTG
CCTGAAGGCG AATATACCTT AATCATTAAA TATATTGGTA GTGATGATTT AGAGCAAAAA
ATCTCGGTTG TTGATGGTGA GGTTTTATCG AAAAACTTTG TTATTGGTGC GGCTAACTCG
GACCAAAAAG AGTTAGATAA TATTATCGTC TATGGGCAAA GAGCAGGGCA AGCGAGTGCT
ATTAACCGAC AAAAAAATGC TAACAAATTA GTTTCAGTTA TCAGTAGTGA TGGTATAGGC
CAATTGCCGG ACCAAAATGC TGCTGAGGCT TTACAGCGTA TGCCGGGAAT ATTTATTGAA
CGTGACCAAG GCGAGGGGCG TTTTGTTGGT ATTCGCGGTA TAGATCCAAA CCTGAATAAT
GTCACTATCA ATGGTCTAAA TGTTCCTTCA CCCGAGGCGG GCGTTCGCAG TGTCGCCTTA
GATGTTATCC CGAGTGAACT TATTTCATCA TTAGAAGTGA GTAAAACAGT TACGCCAGAC
ATGGATGCCA GTGCCATTGG CGGTTCTATC GAAGTAAAAA GTTTATCAGC TTTTGATCGT
AACGACAGAA GTTACTCTTT TACTGCACAA GCATCACATA ATGAATTGGT CTCAGAAACT
AGCCCTAAAC TTTCGGGAAG TTATACCGAT ATTTATACCT TAGCGGGCGG AAGTCAGCTT
GGCGTTGCCG GCGCTGTTTC ATGGTTTAAG CGAGAGTTTG GCTCTCATAA TGTCGAAACA
GATGGCGGTT GGAGCGTATT TGATTATGAA GACGCTGCAA CAGGCGAAGA TGTTGAAGCG
TTTGGGGCAG AAGAAATAGA GCAACGTGCA TATAGTATTG AACGTGAACG TTTGGGCGCG
GCTTTAAATT TTGACTTATA TACCTCAGCA ACAGATAAGT ACTATTTACG CACCCTGTAC
AGTAAGTTTT CAGATGATGA ATATCGTTTA AGAAATCAAT TTAAATACGA TAAAGGCCAA
ATTGATTTAA CCTCAAACAC CCAGAATAGT GCCCAGTTTT CTGATGCCAA AATGGAGCGT
GATACCAAGG ATCGTTATGA AGCACAAAAA ATATTCTCCA TCATCACTGG AGGGGAAAAC
CAGATAGGCG ATTGGCTTGT TGAATACAGT GCGGGTTACT CTAAAGCCAG TGAAGCTGAA
CCGGATCGTA TCGATAGTAC TTTTGTGGCT AAAGATTTAA CTTTTGGCTA TTTGAGTTCT
GGTCCTATTC CACAGCTAAC GTTTGATGCT GCATCTCAAG ATTTGAATAA CTTTGCCTTA
GATGAAGTGG TTTATGAAAA TAACTTAACA CAAGATGAAG AAGTCACCTT AGCATTAGAT
TTCAGCAAAG ACTTTGTTTG GCAAAACAAC AATGGTCAAA TTAAGTTTGG TGGAAAATAC
CGTACCCGTG AAAAGTTTAA CCGTGTTGAT GCAGCAATTT ATGATGGTGG TTTTACCGAT
GCTGCAGGCG TTGATACCAG CGCACAAGCA TTCAATACAG GACCTGTTGA TTACAATTTA
GGGGATTTTG GCCCTGGTCT TTCTCAACAT CAGCTGAGTG ATTATGTTCT TACAAATATT
AATGATTTTG AGTTAAACAG CCTTAAATCT GATATTGAAA GTCAAGGTAG CTCCTATACC
AGTAATGAAG ATGTATTAGC CTTATATGCC ATGGTCAGTT TTGACATTAA TGATTGGTAC
ATTGTTGCGG GTGTTCGTTA TGAAGATACC AGCTTTAGTA CCAAAGGCAG TAAAGTCGAC
TTAATTGTTG ATGAAAGTGA TGGCAGTGAA ACCGTCAATA TCAGCCCTTG GCAGGGCGCT
AAAGACTATG ATGATTTTTT CCCAAGTCTA AATGTGCGTT ATAACATTAG CGACAAGTTA
ATCAGTCGTT TTGCTTATAC ACAAACTATC GCCAGACCAA CCTTCAGTGA TACTGCGGCA
AACCAATTGA TAGAAACGGA AGTGTCAGAA GATAATGGTC AAATCATAAC CGAGCGAAAA
GCTGTTGTGG GGAATCCTGA TCTTGAACCG TATGAAGCTA ACAACCTTGA TTTAAGTCTT
GAGTATTATC CTGGACATAT TGGTGTCTTA TCAGCAGGTC TTTTTTATAA AGACATTGAT
AATTATATCC TTAAAGAAGA GGTGCAGGAT AATGGACAGT GGGATGGTTT TGAAGAAGTT
ATTCAGCCGA AAAATGGTGG TAATGCTGCA CTAACAGGTC TTGAACTGGC GTGGACTAAA
ACGTTCGACT CGGGGGTATT GTTAGGTGCC AATGGTACCT TTGTTGATGC GGATGAAAAA
TTGCCAAATC AAGCAGATAC CGTGGGTAAT TTAATGTTTG GCTTTGAAAA TAATGATATC
AGCTTACGAT TAAGCTCAAC CTATAAAAGT GAGAACTTCA AGTTTACCGA TAATGATGCT
GATGTTTATC AAGACGCACA TATGCAACTT GATTTTAGTG CGAAGTATTA TCTGAATAAC
ACCACGCAAA TTTATTTTAA CGCAATAAAT ATTAATGATG AGCCGTATTA CCTCTATCAC
GGTGACACGC AATATAACTA TCAGTTTGAA GAGTATGGTC GTAGCTATGA ATTAGGCATT
ACCATCACAT CTTTTTAA
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| Protein sequence | MKLSLTNFNG NNFRLNKLTI ALAGSLALLT APLSWADSVI EGRVTDASNK VYFQGAQVQI
KELDLTVISE RDGSFRFAKL PEGEYTLIIK YIGSDDLEQK ISVVDGEVLS KNFVIGAANS
DQKELDNIIV YGQRAGQASA INRQKNANKL VSVISSDGIG QLPDQNAAEA LQRMPGIFIE
RDQGEGRFVG IRGIDPNLNN VTINGLNVPS PEAGVRSVAL DVIPSELISS LEVSKTVTPD
MDASAIGGSI EVKSLSAFDR NDRSYSFTAQ ASHNELVSET SPKLSGSYTD IYTLAGGSQL
GVAGAVSWFK REFGSHNVET DGGWSVFDYE DAATGEDVEA FGAEEIEQRA YSIERERLGA
ALNFDLYTSA TDKYYLRTLY SKFSDDEYRL RNQFKYDKGQ IDLTSNTQNS AQFSDAKMER
DTKDRYEAQK IFSIITGGEN QIGDWLVEYS AGYSKASEAE PDRIDSTFVA KDLTFGYLSS
GPIPQLTFDA ASQDLNNFAL DEVVYENNLT QDEEVTLALD FSKDFVWQNN NGQIKFGGKY
RTREKFNRVD AAIYDGGFTD AAGVDTSAQA FNTGPVDYNL GDFGPGLSQH QLSDYVLTNI
NDFELNSLKS DIESQGSSYT SNEDVLALYA MVSFDINDWY IVAGVRYEDT SFSTKGSKVD
LIVDESDGSE TVNISPWQGA KDYDDFFPSL NVRYNISDKL ISRFAYTQTI ARPTFSDTAA
NQLIETEVSE DNGQIITERK AVVGNPDLEP YEANNLDLSL EYYPGHIGVL SAGLFYKDID
NYILKEEVQD NGQWDGFEEV IQPKNGGNAA LTGLELAWTK TFDSGVLLGA NGTFVDADEK
LPNQADTVGN LMFGFENNDI SLRLSSTYKS ENFKFTDNDA DVYQDAHMQL DFSAKYYLNN
TTQIYFNAIN INDEPYYLYH GDTQYNYQFE EYGRSYELGI TITSF
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