| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3933 |
|---|
| Symbol | |
|---|
| ID | 3522785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 4115971 |
|---|
| End bp | 4117821 |
|---|
| Gene Length | 1851 bp |
|---|
| Protein Length | 616 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637286379 |
|---|
| Product | alkaline phosphatase family protein |
|---|
| Protein accession | YP_270591 |
|---|
| Protein GI | 71282312 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1785] Alkaline phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCT TAAATAAAAA ATCAAATAAA ACATTAAATT TAACATTAAA ATTAACCTCA
TTAGCCGTGT TAGCCGCATT AGCAGGTTGT GATGGCAGCG ACGGAACAAG TGGTGATAAC
GGTACCCAAG GTACAAGCAG TTTAATCAGC CAAACCTTAG TTACTGTTGG TCACGAACAA
TGTCTTAACG GTGGCGTACA AATTGATTCA GGCTTAGATA GCGATAGCTC AGGTATTTTA
GACGCGGGTG AAATTACAAC AACAGAGTTT GTTTGTAAAC CAACAGTGAC TCAAATGCAG
GGTTCATCAC TGACCGCGAC GACCAATAAC CTTTGGTATG AACAAGGACA AAATATTTTA
GGCCAAGCGC AGTTAAATGC TAAATCTTTG GTTAATGCTC GCGGTAAAGC AAAGAATGTC
ATTTTATTTG TCGGTGATGG CATGGGTTTA TCAACCGTTA CTGCCGCACG TATATTAGCA
GGACAGCAAT TAGGAAAATT AGGTGAAGAA CACGAGTTAA GTTTTGATAA ATTCCCTTAC
TCTGGTTTTG CAAAAACCTA CAATGTTGAT GCACAAACGC CTGATTCTGC TGGCACGATG
ACAGCGATGA TGTCAGGTGT TAAAACCGAT GCAGGCGTCA TTGGTGTTGC CGAAGCCATT
AAGCGTGGCG ATTGTGCTAC TGCATCAGGT AATGAACTGG TTACAGCATT AGAATTGGCT
GAGATTGCAG GGAAATCAAC GGGTATTATC TCTACGGCTC GTATTACTCA TGCAACGCCC
GCAGCAACCT ATGCTAAATC TGCGGAGAGA AATTGGGAAG ATATTTCAGA CATGCCTGCC
ACAGCTATTG CCGCTGGTTG TGTTGACATA GCGTCGCAGC TTATCAGCTT TGAAAGTGAT
ATTGAGAGCC GTTTCTCCGG TACTGATGTT GATGGTATCG ACGTTGTGCT AGGTGGCGGA
AGACGCCACT TCTTACCAAA GGACGCAGCA TATAATACCG CTGATGCAAC CAGTTCTGTT
GAAGGTGATA GAACTGATGG TCGAGACTTA ACGGCAGAGT GGCAAGCGCA ATATCCAACG
GGTAGTTTCG TGATTGACCA AGCGGGTTTT GATGCAGTTG ATAGCAACGC TACACAACGT
TTATTCGGTT TGTTTAATGA ATCACATATG CAATATGAAG CCGACCGTAA AAATGATATT
TCGGGTGAAC CTTCTTTACG TGAAATGACC AATAAAGCTA TTGATATACT TGATAATAAT
AAAGAAGGTT TTTTCTTAAT GGTTGAAGCG GGTCGCATAG ATCATGGCCA TCATGCAGGG
AGTGCGCACG GAGCATTAAC CGATACCATC GCATTCGCTG ATGCAGTACA AACTGCTGTT
GAAAACACTG ACCCTGAAGA AACTTTGATT ATTGTTACAG CCGATCATAG TCATGTATTT
ACCATGGCAG GTTATCCAAA ACGTGGTAAT CCAATTTTAG GTAAAGTCGT GAGTGTAGGA
AAAACTGAAC CAAGCTTAGC AAAGGATGGC ATGCCTTACA CCACATTGGG TTATACCAAC
GGTAAAGGTT TTAGAGATTT AGGCTCAGAA ACTGATGCCG ATGAAGGATA TAACGGTGAT
GCGATAACAG GGCGTCAGGA CCTCACTCTG GTTGATACAA ATTCAGCAGG TTTCCACCAA
GAATCTCTAG TACCAAGAGG CTCAGAGACA CATGCAGGTG AAGATGTCGG TATTTATGCA
ATGGGACCTG GCGCTCACTT AATTACCGGC ACAAATGAGC AAAGTGTTAT TTTCCATGTA
ATGGATTATG CCGCTGACTT AGTAAAAAAA GCTGAAAAGG CAATGAACTA A
|
|---|
| Protein sequence | MKALNKKSNK TLNLTLKLTS LAVLAALAGC DGSDGTSGDN GTQGTSSLIS QTLVTVGHEQ
CLNGGVQIDS GLDSDSSGIL DAGEITTTEF VCKPTVTQMQ GSSLTATTNN LWYEQGQNIL
GQAQLNAKSL VNARGKAKNV ILFVGDGMGL STVTAARILA GQQLGKLGEE HELSFDKFPY
SGFAKTYNVD AQTPDSAGTM TAMMSGVKTD AGVIGVAEAI KRGDCATASG NELVTALELA
EIAGKSTGII STARITHATP AATYAKSAER NWEDISDMPA TAIAAGCVDI ASQLISFESD
IESRFSGTDV DGIDVVLGGG RRHFLPKDAA YNTADATSSV EGDRTDGRDL TAEWQAQYPT
GSFVIDQAGF DAVDSNATQR LFGLFNESHM QYEADRKNDI SGEPSLREMT NKAIDILDNN
KEGFFLMVEA GRIDHGHHAG SAHGALTDTI AFADAVQTAV ENTDPEETLI IVTADHSHVF
TMAGYPKRGN PILGKVVSVG KTEPSLAKDG MPYTTLGYTN GKGFRDLGSE TDADEGYNGD
AITGRQDLTL VDTNSAGFHQ ESLVPRGSET HAGEDVGIYA MGPGAHLITG TNEQSVIFHV
MDYAADLVKK AEKAMN
|
|---|
| |