| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3919 |
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| Symbol | |
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| ID | 3521042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4093604 |
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| End bp | 4094230 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637286365 |
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| Product | putative type IV pilus biogenesis protein |
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| Protein accession | YP_270577 |
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| Protein GI | 71280575 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.159309 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTTTATA CTCAGTCTAA TTGTGAAAAA AACACACCGA AAAAAACTTC TAATACCTAT
CATCAATTAA AATTATCGTT GGGAATGACG TTAATTGAAC TAATGGTAGG TATAGGAATT
ACCTCCATAC TTACCACAAT CGCTTTACCT AGTTTCAATG ATTTTATTGT ACAACTGCGA
GTCGATAATG AAATCTCACG TCTTAGCCGT TTATTACTCA CGGCACGAAA TCATGCAATA
AATAGCGGAG ATAACGTTAT TCTCTGCCCC TTAGAAGACA ACGGCACATG CTCAGTGAAA
TGGCATGAAG AGCTCAGTGT ATTTATCGAC ACTAACAATA ATCAGCAATT TGATATCGCC
AACAATGAAC TTTTAATTAC CACAAAGAGC CCTATAACAT CAGGTGACAT ATTGATATAT
GCGAAAAATA GAAACAGAAT AACTTATCAG GCAACAGGGC ATTTGTTTGG GTTAAGCAAT
GGTACGCTAA GGTATTGCCC GAAAGACTAT GAGGAAAAAT CAAGAGCTAT AGTGGTAGCA
CGATCAGGCC GATTTTACGC GACCACAGAT AACAATAATG ATGGTCAAGA TGAAACGCGG
AGCAATCAGA AAATCATCTG TGATTAA
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| Protein sequence | MLYTQSNCEK NTPKKTSNTY HQLKLSLGMT LIELMVGIGI TSILTTIALP SFNDFIVQLR
VDNEISRLSR LLLTARNHAI NSGDNVILCP LEDNGTCSVK WHEELSVFID TNNNQQFDIA
NNELLITTKS PITSGDILIY AKNRNRITYQ ATGHLFGLSN GTLRYCPKDY EEKSRAIVVA
RSGRFYATTD NNNDGQDETR SNQKIICD
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