Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3882 |
Symbol | |
ID | 3520303 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 4052726 |
End bp | 4055176 |
Gene Length | 2451 bp |
Protein Length | 816 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 637286328 |
Product | leucine-rich repeat-containing protein |
Protein accession | YP_270544 |
Protein GI | 71279842 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCAATTC ATTTCTCCAT TTTCAAAACA TTACTATTCT CATTTTTAGT CATCACTCTT ACTGCTTGTG GTGGAAGTGG TGAAGAAAGC CCCGAAGCTA ACCAGGTAGA AGTCATTCCT CCAGTAACGC TACCATCAGT TAACGAAGTG CCCGTTATTA CCTTAAATGA CGAGTACTCA GTCATCGAAT ATAGTGACAT TACTGTTAGT GCTTTAGCTG AGGACAGTGA TGGTGAAATT ATCAGTTATC TATGGCAACA GAAATCAGGG CTTATCGTTG ACTTAAGCGA AACAGATTCA AGTACATTAA CCTTCACCGC CCCTAATGTG AGTGAAGACC AGCAACTCAC TTTTGAGCTG ACAGTTACTG ATGACGACAA CGCACTTACT ACTAAAAATA TAATCATTCG CTTGCATGCC CTAGAAAGTG ATATTGAAGA CATAGTTTTT GCAAATGAGA ACTTCAAAAG CTGTATTTTT AATATAGCTA AGGAAGCAAA TTTGCATAAA TCGGTAAATT TTAGACAAAT TGACTGTCGT GATCAAAATA TCTCGTCAAC ACAAGGTTTG GAAAACTTTA CTGAACTAAA GACATTAACA CTTATCAATA CTCAGATAAA AACTATAGAT TTGAGTGCTT TAATACGGTT GGAAACTATT TGGCTTAGCC GTAATCAATT GTCTGAAATA GACTTGAGCA AGCAAACTTT ATTAACAGAT CTAGAGCTCC ATGATAATAA TTTAGCCAGC ATAAACTTAG TGAATCAAGT CTTATTAACT TATTTGTCTA TAACAAATAA CCAAATAATT TCAATAGATT TAGCAGCTCA AACACAACTA ACTAATCTTG CTTTAGATGG TAACCAACTA CCAGAAGTTA ATTTAAGTGC ACAAAAACTA TTAACTCATT TATATTTATC CAATAACCAA CTGACAAAAG TCGACTTAAG TAAACAAAAA TTGTTAACTG ATTTAGCTTT ATCCGACAAT CAACTGACAA AAGTCGACTT AAGTGAACAA AAATTGTTAA CTAATTTAGC TTTATCCAAC AATCAACTAA CAGAAGTCGA TTTAAGTACT AAACCATTGT TAACTCACTT ACGTTTGAAT GATAACCCGA TAACAGACAT AGATTTACGT GCCCAAAGAT TGCTAATTCT TTTAGGTTTA TCCAATAACC TACTCACAGA AGTCGATTTA CGTGTCCAAG AACTTTTAAT TGATTTAGAT TTATCCAATA ACCTACTCAC AGAAGTCAAT TTACGTGTCC AAGAACTTTT AATTGATTTA GATTTATCCA ATAACCTACT CACAGGAGTC GATTTACGTG TCCAAGAACT TTTAATTGGT TTAGATTTAT CCAATAATCG ATTAACAGAA GTCGACTTGA GTACTCAAAC ATTTTTAACA GGGCTCAATT TGGATGATAA CCAACTAACT AAGATAGATT TAAAGAATCA AACAAAACTA CAATCTTTTT CAATAGACAA TAACCAAATT ACTGAGCTTG ATTTATCTTC ACAGCCTGAA CTCAGCCGTA TTTCTATTTG GAATAATTAT CTCACAGCCA TTAACCTTAG CACCCCATTA AAAATAACAG ATTTAGACCT TACAGAGTCT AAGCTCACAA CTATCGATTT AACTGCCCAA CCACAATTAA AAAATTTAAT CTTATGGAAT AATGAACTGA CAAGTATAGA TTTAAGTAAC CTAGTACAAC TAGAAAGCTT AAATTTAGGC TCGAATGATA ATCTATCTGA AGTTAACTTA GCCGGGTTAA CAGGTTTGTC TAATTTAAGA TTGAGTAATC TAAATCTATC AACTATCGAC CTTAGTCAAC AAAGCAACTT GCTTTCTTTA CACATAGATG GCAATCCACT AACAACCCTT GATTTAAGTG CGCAAAAAAA ATTACATACT TTATCAATAA GTAAGGGTAA CTTAGAAAAC TTTAACTTAA CAAATCTTAC CAAGTTAACT TCCTTCGCTT CTTATAATAT TGAACCTGAA ACCATACAAC TTTTTCCTGA CTTAAAATTA GATTATTTAG CTTTTAATTA CTTCCAAGCA AAATACATTA ATTTAACCGC ACATACTGAG CTAACGACGT TAGTAATTAA TGAAGGGGGG ATAACTGACA TTGATTTAAG TGCCCATGAA AAGATCGAAA ATTTACAGCT AACCGCTAAT CCATTAACAC TAATCAACTT AGACTCACAA AATCTATTAA AATCTTTAAC TTTGGGAGGT AGCCAAATAA AAGAAATAAA CCTAAGTAAT AAAAAGTACC TAAGGTCAAT ACAGCTTACA AGTAATAAAA TAAGCCAAAT AGACTTAACG GGGCTAGATG CACTAGAGTA CCTTCGCCTG ACTGATAATC CATTAACGAA TGTCACCAAG GATTATTTAG ATAGTTTAAA TGGAATTAAT GGTCTAAAAA TTTATTATTA A
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Protein sequence | MSIHFSIFKT LLFSFLVITL TACGGSGEES PEANQVEVIP PVTLPSVNEV PVITLNDEYS VIEYSDITVS ALAEDSDGEI ISYLWQQKSG LIVDLSETDS STLTFTAPNV SEDQQLTFEL TVTDDDNALT TKNIIIRLHA LESDIEDIVF ANENFKSCIF NIAKEANLHK SVNFRQIDCR DQNISSTQGL ENFTELKTLT LINTQIKTID LSALIRLETI WLSRNQLSEI DLSKQTLLTD LELHDNNLAS INLVNQVLLT YLSITNNQII SIDLAAQTQL TNLALDGNQL PEVNLSAQKL LTHLYLSNNQ LTKVDLSKQK LLTDLALSDN QLTKVDLSEQ KLLTNLALSN NQLTEVDLST KPLLTHLRLN DNPITDIDLR AQRLLILLGL SNNLLTEVDL RVQELLIDLD LSNNLLTEVN LRVQELLIDL DLSNNLLTGV DLRVQELLIG LDLSNNRLTE VDLSTQTFLT GLNLDDNQLT KIDLKNQTKL QSFSIDNNQI TELDLSSQPE LSRISIWNNY LTAINLSTPL KITDLDLTES KLTTIDLTAQ PQLKNLILWN NELTSIDLSN LVQLESLNLG SNDNLSEVNL AGLTGLSNLR LSNLNLSTID LSQQSNLLSL HIDGNPLTTL DLSAQKKLHT LSISKGNLEN FNLTNLTKLT SFASYNIEPE TIQLFPDLKL DYLAFNYFQA KYINLTAHTE LTTLVINEGG ITDIDLSAHE KIENLQLTAN PLTLINLDSQ NLLKSLTLGG SQIKEINLSN KKYLRSIQLT SNKISQIDLT GLDALEYLRL TDNPLTNVTK DYLDSLNGIN GLKIYY
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