| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3871 |
|---|
| Symbol | |
|---|
| ID | 3519046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4041230 |
|---|
| End bp | 4043596 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637286317 |
|---|
| Product | putative sensor histidine kinase |
|---|
| Protein accession | YP_270533 |
|---|
| Protein GI | 71278361 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3614] Predicted periplasmic ligand-binding sensor domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAAC TCCACTTACC GCGTATTATT ATTTCTGCCA TTTTATATCT TGCCGTTTGT
TTTGGCGCGA TATGGCTAAT CAATCCACAA TCTCTAGTAA ACTTTGTCGG TCCTTCTGCG
GCGCTTATTA GTGGTCTACT GCTTATTTGG GGGATCACAC CACTTATCGC TGTATTACTG
GTGAGCCCTC TATTGGCAGT TGGTCTGGGC TATTACTTTC ATCTAGATGC CAATTTATCG
GTGATGACTA TTGCCGTACT AGCCATCATT TTACAAGGGT GTTGGACTAA ACAGCTTGTT
TATCGTTTTA TTCATTATAA AGAATGGCTA ACATCAAGAA AGCAGCTGTT TTTCTTTATA
TTACGTATAG GCCCAATTGC AAGCTTAGTG TCTGCCAGCT CAGTATTAGT GATTGCTATG
CTTGATAATC AAGTAATGAC AGGCACTTTC TTCTATACCT TTGTTAATAC TTGGTCGACG
AGTATGTTAG CTGCGGTATT TTTTATTCCA TTATTGTTAC TCATTAAAAA TGCGGAACGG
TTTAAATTGA CTAAACGACT CTTTGTCAGT TTTACTTCTA TTTTAGGTGG TTTAGCTATT
TTATTACTGC TTAAAACCTC CCAGCATGAA CAGCAAGACT ATAGACAAGC ACTTTTTAAC
CAATCTAAAA CAGAGGTAGA ACGTTTAGTA CTCGCTGAAG TTGATGACGT TGTGAACAAC
ATTAATAGTC TTGCCGCATT ATTTAAAGCC AGAGAGAAGG TTTCATTAAC AGAATTTAAC
TTATTTAGTG AAGGTATTCT TGAGCAGGGC TCAAGCGTAA GAGCGTTAGA GTGGGCTCCA
ATTGTTCCCT TTGCCGATAG AGCCGGCTTT GAACAAGAAA GCAGAAAAGC ACTGAAAAAG
GACTTTGCTA TTATAGAGCT GTTAGCAAAT GGCAATACCA TACCAGCTCA GTCCCGTACT
CAATATGCTC CTTTGTATTA CATTTACCCT CAATACAACA ACCAGGAAGC TTTAGGTTTA
GATGTTTATA GTAATCCTAC GCATATTTTG TCTATGCAAG TTGTTGTTAA TAGCAAAGCA
GTGATTGCTA GTGCACCAAT CACTTTAGTA CAAGACGAAT TAGCTAAGCC CGGTATGTTA
TTTAGTAAGG CCGTTTTTTT ACCGCCTGAG GTTAACGAAC TTGCTAGTAA CGAAGCTCAG
CAGAAGTTAT CAATAATTAA GGAAGGTAAA TTATTAGGTT TTGTGGTCGC TGTCGCTCAG
TTTGATAGTT TTTTTGAGCA ACTCGCTCAG CAAAAAGAGC AAGAGGTCAG TTTTTTTATT
CAAGATGTTT CAGGTAGCCA ACCTCTTTCT CTCTTTGGCC AGGCTTTTCC TACGGTAAAT
CGCCATGTTG ATACGATTAC GATTGAGGTG TTTTCTCGAC TTTGGCAAAT TGACATTGCG
GAAAAACAAC CTTGGTTTAG TCAGGCAAAA AGTTGGCAAG CGTGGGCGGT TCTCATTGGA
GGAACATTTG GCGCCGTATT ATTTCAAATG CTGGTATTAA TGATGGCCGC CTATTCGAGT
GAGCTAGGGC AGCAAGTTGA TATTAAGACC AGAGCACTTA TTTTAGCTAA AGAGAGCTCA
GAACAAAAAA GTTTAGCTAA AAGTAATTTC TTACAGAGCC TAAACAAAGA GTTGCGGGTG
CCACTATTAG CAGTGAAAGC ATTTGTGGAG CAGCTAAAGA AAAAAGGCAT CAATAATAAG
CAGGTCACAG GAATAAGCCA TGCGGGCAGT AATGTTGCAC TGTTACTCGA TACTATGATG
GACTTATCTA ATATAGAGTC AGGAAAAATA ACAGCTAAAG AAGACTGTTT TGATTTTTAT
GGTTTTCTAC AGCGCACCGA GTCGTTATTA AAAGCAAGCA ATGCGTATGA AGGGAAATCC
ATTTTTTTCT TGATTGATGA GAGTGTGCCT CACTACCTCA ATAGTGATGA GTTATATATA
CAAAAACTGC TCAATGCTCT GATTGAAAGT GCACATCATT TATTGAAAGT CGATTCGCTG
CGATTATCGG TTAAGCTTCA CAAACATAAA TTAGCAGATA CTAGCCTGTT TTTTACTTTA
TCACCGTTAA ACCCTGCTTC AACTAATTCA ACTAATTTAA CTAATTCAAA TGAGCAAACG
TTCCATGCTC AAAGTCATGA TGATTTGACT GCAGATAGCA CCGCATTGGC TATGGCTATT
AAATACAGTC AATTACTAGG TGGTGATACC AGTTTAGGCG CTTTAAGTTC TGGCGCAGGA
GTTTTAAATG CTTCTATTCG AGTCACCATA TCATCAAGTG AACAGCAAGA AATTCAGCAA
GGATTAATAT TTGATTTAAT GAGTTAA
|
|---|
| Protein sequence | MMQLHLPRII ISAILYLAVC FGAIWLINPQ SLVNFVGPSA ALISGLLLIW GITPLIAVLL
VSPLLAVGLG YYFHLDANLS VMTIAVLAII LQGCWTKQLV YRFIHYKEWL TSRKQLFFFI
LRIGPIASLV SASSVLVIAM LDNQVMTGTF FYTFVNTWST SMLAAVFFIP LLLLIKNAER
FKLTKRLFVS FTSILGGLAI LLLLKTSQHE QQDYRQALFN QSKTEVERLV LAEVDDVVNN
INSLAALFKA REKVSLTEFN LFSEGILEQG SSVRALEWAP IVPFADRAGF EQESRKALKK
DFAIIELLAN GNTIPAQSRT QYAPLYYIYP QYNNQEALGL DVYSNPTHIL SMQVVVNSKA
VIASAPITLV QDELAKPGML FSKAVFLPPE VNELASNEAQ QKLSIIKEGK LLGFVVAVAQ
FDSFFEQLAQ QKEQEVSFFI QDVSGSQPLS LFGQAFPTVN RHVDTITIEV FSRLWQIDIA
EKQPWFSQAK SWQAWAVLIG GTFGAVLFQM LVLMMAAYSS ELGQQVDIKT RALILAKESS
EQKSLAKSNF LQSLNKELRV PLLAVKAFVE QLKKKGINNK QVTGISHAGS NVALLLDTMM
DLSNIESGKI TAKEDCFDFY GFLQRTESLL KASNAYEGKS IFFLIDESVP HYLNSDELYI
QKLLNALIES AHHLLKVDSL RLSVKLHKHK LADTSLFFTL SPLNPASTNS TNLTNSNEQT
FHAQSHDDLT ADSTALAMAI KYSQLLGGDT SLGALSSGAG VLNASIRVTI SSSEQQEIQQ
GLIFDLMS
|
|---|
| |