| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3774 |
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| Symbol | pspF |
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| ID | 3520164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 3937178 |
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| End bp | 3938296 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637286221 |
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| Product | sigma-54 depedent transcriptional activator PspF |
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| Protein accession | YP_270441 |
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| Protein GI | 71279704 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGAGTT TTAACCAACA AGATAATCTT CTTGGCCAAT CAAATAGCTT TTTAGAAGTA
CTCGAGCAAA TATCCCAAGT TGCAACGTTG AGTAAACCAG TACTTATTAT TGGTGAACGA
GGTACAGGTA AAGAGCTTGT TGCCGCACGT TTACACTTTC TATCGAAACG CTGGGAACAG
AGCTATTTAA AGCTTAATTG TGCCGCATTA AATGAAAACT TACTCGAAAC AGAATTGTTT
GGTTACGATA GTGGCGCGTT TACTGGTGCC AGTAAACGTC ATGAAGGACG ATTTGAACGT
GCGGATAAAG GCACACTCTT TTTAGATGAA ATTGCCAATA CCTCAGGCCT TATTCAAGAA
AAGTTACTGC GCGTAGTTGA ATACGGTGAA TTTGAACGTG TTGGGGGCTC AAGAACAATT
AATAGCGATG TTCGTTTGGT CGCTGCAACT AATGAAGACT TACCTACGTT AGCAGCATCA
GGCCAATTTA GAGCGGATTT ATTAGACCGC TTAGCCTTTG ATGTTATAAC CCTCCCCCCA
CTTAGAGAAC GTTTAGACGA CATAATAATG CTCGCAGAAC ATTTTGCTAT GAACATGGCC
CGCGAACTTG AGTTTGAATT ATTTAGTGGC TTTACCGAAA AAGCTAAACG TAGCCTGCTT
GAATATCACT GGCCAGGTAA TATTCGTGAG TTAAAGAATG TCGTTGAGCG AAGTGTATAT
CGTTGTAACA ATCCACATTT ACCCGTACAT GAACTAATCA TTGACCCGTT CGAGTCACCT
TTTAGACCGA ACCAACGAAT TAAAACTCAT GATAGAGTCA ATGAACTCAA TAAAAATAAT
ATTTCAACGA GTGATAATGT AGTTGATGAT AGCGTTACAG TAAAACCTTC AGCAGTCGAC
ACAGCTAAAG TAGCGCCGAA AGTTGTGACT CAACAATTCC CTCAGTCATT AAAAACACTA
TCACAAGAGT ATGAAATAGA ATTAATACAA ACAGCATTAG CTCATTGCCA ATTTAATCAA
AAGAAAACCG CAGAAGCACT CGAATTAACA TATCATCAAT TAAGGGGCTA TCTAAAAAAA
TATAACTTGC TTGATGGTAG TATTACCGAT GAACTTTAA
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| Protein sequence | MASFNQQDNL LGQSNSFLEV LEQISQVATL SKPVLIIGER GTGKELVAAR LHFLSKRWEQ
SYLKLNCAAL NENLLETELF GYDSGAFTGA SKRHEGRFER ADKGTLFLDE IANTSGLIQE
KLLRVVEYGE FERVGGSRTI NSDVRLVAAT NEDLPTLAAS GQFRADLLDR LAFDVITLPP
LRERLDDIIM LAEHFAMNMA RELEFELFSG FTEKAKRSLL EYHWPGNIRE LKNVVERSVY
RCNNPHLPVH ELIIDPFESP FRPNQRIKTH DRVNELNKNN ISTSDNVVDD SVTVKPSAVD
TAKVAPKVVT QQFPQSLKTL SQEYEIELIQ TALAHCQFNQ KKTAEALELT YHQLRGYLKK
YNLLDGSITD EL
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