Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3716 |
Symbol | |
ID | 3522043 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 3868136 |
End bp | 3873892 |
Gene Length | 5757 bp |
Protein Length | 1918 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637286163 |
Product | glycosy hydrolase family protein |
Protein accession | YP_270383 |
Protein GI | 71281571 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.442328 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTGCGG TAGCACCACA ATCGCTTGCA ATGCCCAATA CCGTTGGTTC TGTTCAAAGT AATATCGGTA CGGATAATAC TCAAAAAATA AGCAGCGTTG ATAAAAAAAA TGAAAAAATA ATCAAGAAAG CTAATAAACA GATTCGAAGA TCAGAAAAAG AAATAAATAA ACTAGAAAAG ATGATCGTTA AAGAAGAAGG GAAAATTGCT AAGTATGAAG AAAAGATCGA GAAACAAGAA GAAAAAATAG CCAAGGCAAA AGGTAAAAAT AAAGAAAATA AAATAGCGAA AGCTATGAAT GAAATTGAAA AATCAAATAG AAAAATTGAA AGGTCTATTG AGAAAATTAC TCAAGCATTG AGTAAAATAG AAAGTGAAAA AGAAAAAATT TCTGTTGCTA AAGCTATAAT TGAAGACTTA AATACTCCCG TTCTACAAGA CAGCGACAAT GATGGTGTCG TAGATGATTT TGATTCTTGT CCAAATACTT TTGCTGAAAC GTTAGTCGAT GCTAATGGTT GCTCACTTGG ACAATTAGAT AGTGATAATG ACGGCGTAAA TGATGACATT GATCAGTGTC CAGATACTGC TGTAGATGCT GTAGTTGATA CCAATGGCTG TCTTTCAATT CCACCTACAA GCGATAATGG TCTTCCAATT ATCAATTTTG AGGTAGGTGG TACCGGCGAA AGCTTTTCTT GGAACGTATT TGAAAATGTT GATAACCCCG CAGTACAATT TGTTACTAAT CCAGAATCTT CAGGTGTAAA TTCTTCTACA ACAGTCGCTA TGTTTACCGC GAGAGTCGAT GGTGCTCCAT GGGCAGGTGC TGAAACGGCA CACGGTAATA TTGGACCAAT TACGCTAGAT GCCACTAACA GCATCATAAA AATAATGGTG TATAAAACCG TTATCAGTGA TGTTGGACTT AAACTGGCCA TTGCCAATGG CGGTGCTCAA CCAGAAATTA AAGTGGCTAA TACTTTAATC AATGAATGGG AAGAATTAAC CTTTGATTTT TCAGGTAACA TCGGTTTATT TGAGTCTATT AATGTAGATC AAATCATCGT CTTCCCAGAT TTTAATTTGG CGGGTAGAGC ACAAGAGAAT GTGGTTTATT TTGACAACAT TACTTTTAAC GGTAATGGTG CTGATACAGG TGGCGGTGAT ACCGGTACGG GTGGTGATGG CGACACTAGC GGTACTATTG AAACTATCAC TTTTGAAGCT AGTGGCACAG GCACGGCTTA TAGCTGGAAT GTTTTTGAAA ACCTCGACAA CCCAGCAGTA GAAATTGTCA CTAACCCTGA TGCAACGGGT ACAAACACAT CAACCAGCGT AGCTAAATTT ATCGCTAGAC AAGGAAGTGC TCCTTGGGCA GGTGCTGAAT CAGCACATGG CGATTTCGGA CCATTAACGT TAGATGCTTC AAACAGCATT GTAAAAATTA TGGTTTATAA AACAGTCATC AGTGATGTCG GACTTAAATT TTCTATCGCT AGTGGCGGTG CACAAGGTGA AATTAAAGTA GCGAATACCT TAGTTAACCA ATGGGAAGAA TTAACCTTTG ATTTCTCAGG TAACATAGGT GCAGTCGAAA GCATTAATAT TGACCAAATC ATCGTATTCC CTGATTTTGA CTTTGCTCGT AGTCAAGAGA ATGTGGTTTA TTTTGATAAT ATTAGCTTTT CAGACGGCAC AGGCGGTGGT GACACTGGTA CTGGCGGTGG CGATAATGGC ACAGGCGGTG GTGACACGGG TACTGATGGC GGCGATACTG GCACTGAAGG TGAGTTATTA ACGAACAGCT CTTTTGACAA CGGTACTGAA GGTTGGAGTG GAGGAACTGT TATTGTTGAA GGTGATAATA ATATCTTTAC TGCAGATGTT GCTGCACCAG GTAACCCTTG GGATGTTAAC TTAAGCCAAG TAATGACACT CGTTCCAGAT GCAACTTATG TTTTAAGTTT TAAGGCAAAA GCATCAGTGG CACGTACTAT TATTGCAGGA CTTGGTCTAG CGCACGACCC ATGGACTAAT ACCACTGAAA CAGCAACATT ATCTACACAA TGGCAGAGTT TCACTTACAC TTTGACCACA TCAGGTTTTG GTGATGATAA CAGTCGCGCA CTGTTTGATA TGGGTAGCGA AGCTGGTACG GTTTATCTAG ATGATATCAG TGTAATCCTA CAAAATTCTG ATGGTGGCGA CACTGGCACT GATGGAACCG CGCCAAGTGA AGATTGGTCG ATGGTATGGA ACGATGAATT TGATGGTAGC GACATTGACT TAAGCAAATG GGAACATGAA GTTAACTGTA GTGGTGGTGG TAATAACGAG AAACAATGTT ATACCAGCAA CCCTGAAAAT TCATTTGTAG AAAATGGTGC TTTAAAAATT GTTGCTAAAC CAGAATCTGG TCAAGCATTA CCTTATAGTT CAGCACGTTT ACGTACTAAA TATAAAGGTG ACTGGAAATA TGGCCGAGTT GAAGTAAGAG CTAAACCTCC ACGTGGTCAA GGTTCGTTCC CGGCAATATG GATGTTACCA ACTGAAGACG TTTATGGTGG TTGGCCGCAT TCGGGGGAAA TTGATATTTT TGAATCCGTT AACTTGAAAA CCATTAATAA TCAAGGTATT GAAGAGGCAG GAGTACATGG TAATCTTTGG TATGGTCGTA GCTGGCCAAA TCAATCAAAC AGTGGTGCTC ACTTTAGTTT ACCTGGAGAA GCAAACCCTG CTGACGGCTT CCATATTTAT GCAATAGAAT GGGAAGAAGG CGAAATTCGC TGGTATGTCG ATGGTTACTT ATATCAAACA CAATTAAGGT CACAAGTGAA TATTGACAGT GACGGCGATG CTAATGGTTT ATTACACCGT GGTTGGTTTG CTGACTATGA GAATGAATTC CATTGGGATA ACTCGCCATT CAACCAAGAC TTCCATTTGA TATTAAACTT TGCCGTGGGG GGAAGTTGGT CTGAAAATGT TAATAATGGC GGTATCGATG CCTCAGCCTT TAATGCTGAC AATGCTTTTG AGTTTGATTA CGTTCGCGTT TATGAGTGTT CAGTTGACCC TATAACTGGT CAAGGTTGTG CAAGTGTTCG TGATGGTTAT TTAGATCCTA TTAGCGAGGG TGGTTCATTA GTTGATGGTG ATGCACCAAC ACCAATAAAA CCTTCAACAG GTGAAGCAAT TGATCTCGTT GTATTTGATA ATGCTAATAA TGAAAGTTGG CCTGCATGGA GCAGTAATGA AGAAACAACA TTTGCTGTTG TTACCGATGA TGTCGACCAT GACCAAGTGG TTGAATTTTC AATGGGAGCA GCACCGGCTG TCGTTGGTTT TAATACCTCT CAAGCGGATA TTCCAGTAGC GTATGACGGT TCACCGATGT TAAATAACGG TTGGTTGGAA TTTGACATGA AATTGGTGAC GCCACCAAAT AATGCCAATG CCAACTGGAA TTTGAAAGTT GAACAAGGTG GTACAACGAC TGAAGCGCTT ATTCAAATAT CTACACCCAC CGCAGAATGG CAGCATTATG CAATATCACT AAACGATTTA AGTAATGCTG GTTTAGAGCT AAACGGTATT GACGTTATCA TGATTTTTCC AGATTGGGCT CAAGGTGAAG GTGCTGTCTT TAGAGTAGAT AATATCACTA TTTTGCAAGG TGAAAACACT GGCGGCGATA GCGGCTCTGG TGGAGACACA GGTGACGGAG ATTCTGGTCC AGTTGCAGGT GAAGAAATTC TAAGCAATGG TTCTTTTGAT AATGGCACTG AAGGTTGGAT AGGCGCTGTT GCTGTTAATA CCGAAGGTGA TAATACTTTC TATCAAGCGG ATATTGCAGT AGCAGGTAAC CCATGGGATG TTAACTTAAG TCAAATAATG ACTTTAATTC CCGGTGAAAC TTATGTTTTA TCGTTTAAAG CAAAAGCATC TATAGCGCGG AGTATGATTG CCGGTCTTGG TCTTAATTCA GACCCATGGA CAAATGTTAC GGAAACCGTA GCATTAACGA CGGAGTGGCA AACCTATAAC TATGTGTTCA CTATTGCAGG TTTTGGTGAT GATAACAGCC GGGTGTTGTT TGATTTAGGC GCTGAAGCAG GTTCAGTTTA TATTGATGAT GTTAGTGTTT CTATTCAAGC TAATACCGAC GGAAATACTG GTGGTGGAGA TACTGGAGGT CAAGTAGTTG ACGATGAGTT TGTTATTATT TCTTCTACGG ATGACACTGA TGTTAGCCTT ACCCCAGATA CTATTGGTGA ATGGAGCACT GGCACGGTAA TTCAAGCTGA TGTTACTTTT GATGGCTTAA TGGGGTGGGA GCTTACTTCT AGTGCTAACT CACCAGAACA AGGTAACTGG GGCACTGTAT TAGCTTTCCA AAACGGTATT TTGGGTGACT TTAGTTTATT CAACCGTGTT GAATTAACAC TAGCGACTAG TGGCGGTTAT GATGGTGGCT TTAAAGTGGC GATATCAGCT AACGGAGTTA GTAAAGAAAT TAGCCTGCCT CTAGATCAAA GTATTGCAAC TTGGCAAACA ATTTCAATTG ATGCTGCTGA TATCCCATTG AACTTATCAT CAATTGATTG GATTGCCGTC TATGGTATTG GTGGCCAAAC AGGCGTTTCA ACTATTAATG TGACTGACTT CTCGCTTATT AAAAATGAAG CCATTGCCTT TGATAGTGAA ACGAATGATG ACTTTGTCTT TATTTCATCC GATGCAGATA TCACCAGCGA CTTAATTGTT GATGATGACA ACAATAGTGC TGCTGGCAAC ATTATCTTTG GTGAGTGGAG CACAGGTACG GCAATAAGCG AAATTAACTA TTCAGGTTTA GATGCTATTC AACTTACCGC TGGTGGTGGT TGGGGTGCAG TACTTGCCCT ACAAGGTGAT ATTTCTGATG GCGTAAATGT TGATAACTAT GATGTTGATA TGGCTAATTA TACTAACATT AAGTTTAAAG TCGCTTCACA AGGGACTTTC GAGCGTTATG CGTTATCTAT TGTTTCTAAA GTCGGTGCAA ATGAAACTGC TCAAGAAGTT AGCTTTAGCT TAGCAAATCC CGCTGATTGG AATAGCATTG ATATAGATTT AGCACAGTAC GGTGTTAATT TATCAACTGT AAATCAAATG GCAGTGTTTG GGGTTTATGC AGGCGGCTCT GCTAGTCAAA AAATCTATAT CACCGATATG GTGCTTTATG ACACTGGTAA AGTTACGCCA GCAAAAGAAA GCTCAGATGA TAAATTTGTA TTCTTCTCAT CTAGCGGCGA GAGTTCAGAT ATGATCTTTG ATGGAGATGA CTCAGCGCAT AATGGCAATA CCACTATTAG CGAATGGTCA ACTGGCACCA CGCTAACATC TGATGTTGTT TACAATGGCT TAAATGCTTT TGAATTAACA AAAGGTGCAG GTTGGGGCGC GGTACTTGCG TTAATGGGAG ATACTTATGG AGGTGTGCAA GAGTACAAAT TAGATGTGGC TAAATATAGC ACCATTAATT TCAAAATTGC TGCTCAAGGT GCCTTCTCTG CTTATTTTAT CGATTTTATT GTTGATGGTG CAGAATTCAA AGTACCGGTT ACGGTTAATA GTAACTGGAC AGAGGTAAGC ATCAATGTGG CTGATATACC ACTTAACTTA TCTAAAATTA CACAAATAGC GATATTTGGT GAAGGTGGTG GTGTAGGTAA TAAAATTTAC ATTACTGATT TAAATATTTC AAAATAA
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Protein sequence | MFAVAPQSLA MPNTVGSVQS NIGTDNTQKI SSVDKKNEKI IKKANKQIRR SEKEINKLEK MIVKEEGKIA KYEEKIEKQE EKIAKAKGKN KENKIAKAMN EIEKSNRKIE RSIEKITQAL SKIESEKEKI SVAKAIIEDL NTPVLQDSDN DGVVDDFDSC PNTFAETLVD ANGCSLGQLD SDNDGVNDDI DQCPDTAVDA VVDTNGCLSI PPTSDNGLPI INFEVGGTGE SFSWNVFENV DNPAVQFVTN PESSGVNSST TVAMFTARVD GAPWAGAETA HGNIGPITLD ATNSIIKIMV YKTVISDVGL KLAIANGGAQ PEIKVANTLI NEWEELTFDF SGNIGLFESI NVDQIIVFPD FNLAGRAQEN VVYFDNITFN GNGADTGGGD TGTGGDGDTS GTIETITFEA SGTGTAYSWN VFENLDNPAV EIVTNPDATG TNTSTSVAKF IARQGSAPWA GAESAHGDFG PLTLDASNSI VKIMVYKTVI SDVGLKFSIA SGGAQGEIKV ANTLVNQWEE LTFDFSGNIG AVESINIDQI IVFPDFDFAR SQENVVYFDN ISFSDGTGGG DTGTGGGDNG TGGGDTGTDG GDTGTEGELL TNSSFDNGTE GWSGGTVIVE GDNNIFTADV AAPGNPWDVN LSQVMTLVPD ATYVLSFKAK ASVARTIIAG LGLAHDPWTN TTETATLSTQ WQSFTYTLTT SGFGDDNSRA LFDMGSEAGT VYLDDISVIL QNSDGGDTGT DGTAPSEDWS MVWNDEFDGS DIDLSKWEHE VNCSGGGNNE KQCYTSNPEN SFVENGALKI VAKPESGQAL PYSSARLRTK YKGDWKYGRV EVRAKPPRGQ GSFPAIWMLP TEDVYGGWPH SGEIDIFESV NLKTINNQGI EEAGVHGNLW YGRSWPNQSN SGAHFSLPGE ANPADGFHIY AIEWEEGEIR WYVDGYLYQT QLRSQVNIDS DGDANGLLHR GWFADYENEF HWDNSPFNQD FHLILNFAVG GSWSENVNNG GIDASAFNAD NAFEFDYVRV YECSVDPITG QGCASVRDGY LDPISEGGSL VDGDAPTPIK PSTGEAIDLV VFDNANNESW PAWSSNEETT FAVVTDDVDH DQVVEFSMGA APAVVGFNTS QADIPVAYDG SPMLNNGWLE FDMKLVTPPN NANANWNLKV EQGGTTTEAL IQISTPTAEW QHYAISLNDL SNAGLELNGI DVIMIFPDWA QGEGAVFRVD NITILQGENT GGDSGSGGDT GDGDSGPVAG EEILSNGSFD NGTEGWIGAV AVNTEGDNTF YQADIAVAGN PWDVNLSQIM TLIPGETYVL SFKAKASIAR SMIAGLGLNS DPWTNVTETV ALTTEWQTYN YVFTIAGFGD DNSRVLFDLG AEAGSVYIDD VSVSIQANTD GNTGGGDTGG QVVDDEFVII SSTDDTDVSL TPDTIGEWST GTVIQADVTF DGLMGWELTS SANSPEQGNW GTVLAFQNGI LGDFSLFNRV ELTLATSGGY DGGFKVAISA NGVSKEISLP LDQSIATWQT ISIDAADIPL NLSSIDWIAV YGIGGQTGVS TINVTDFSLI KNEAIAFDSE TNDDFVFISS DADITSDLIV DDDNNSAAGN IIFGEWSTGT AISEINYSGL DAIQLTAGGG WGAVLALQGD ISDGVNVDNY DVDMANYTNI KFKVASQGTF ERYALSIVSK VGANETAQEV SFSLANPADW NSIDIDLAQY GVNLSTVNQM AVFGVYAGGS ASQKIYITDM VLYDTGKVTP AKESSDDKFV FFSSSGESSD MIFDGDDSAH NGNTTISEWS TGTTLTSDVV YNGLNAFELT KGAGWGAVLA LMGDTYGGVQ EYKLDVAKYS TINFKIAAQG AFSAYFIDFI VDGAEFKVPV TVNSNWTEVS INVADIPLNL SKITQIAIFG EGGGVGNKIY ITDLNISK
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