| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3507 |
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| Symbol | |
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| ID | 3521212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 3643010 |
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| End bp | 3644275 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637285955 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_270181 |
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| Protein GI | 71280743 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.568774 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAAGC CCATCAGCAA CAAAATAAAA AAAACCAACT ACCGTAACTA TTTATTATTT
ACGTTAACTA TTTGTATAGC AGCCGCTGTA CTTACCATTG CCAAATCAAG TATTGATACA
GGAAAAACGT ATAACGTTGA GAAACAAAAC TTAGTCCTAG ATACCGTAAA ACAATCAACG
TTTACTGAAT TTTTACCTTT GCGTGGTTTA GTACAACCCG AAGAAACAAT TTTTATAGAT
ACTATTGATG GGGGGCGTGT TGAGGAAGTT TTTGTTCAAG AAGGCGCATT GGTTAAACAA
GGTCAAGCAA TTCTCAAATT AAGTAATACT AATTTACAAC TGAATGTTCT AGCACGAGAA
GCTGAAGTGT CAGAGCAAAT CAATAATATG CGCAATACAC GTTTAGCATT AGAACAAAAT
CAATTATCGC TTAAGCGAGA TGTAATTGAA CTCGATTTTT CAGTACTACG TTTACAAAAA
GATTTTAATC GCCATAAAGC CTTAATCGAA AAAAAAATAA TTTCACAACA AGCTTTTGAA
CGAGTAGAAG ATGAATTAGC TTTTCAAATT AAATATCGAG AAACAGTTAA AGAAAGCCAA
GAAAAAGAAG CCATATTACA AAGCCAACAA TTAGCGCAAC TTGAACAAAG TATCCAAACA
CTACAAAGCA ACCTCGCTAT TTCTCGATCC AGTTTAGATA AGTTAATTAT TCGAGCCCCA
AAAGCTGGGC AGTTAACATT TTTAGATGCC AGAGTCGGTG AGTCAAAACG TGATGGCGAA
AGGTTAGGTC AAGTGGATTT AATTGACCAA TATAAAGTCA GTGCACAAGT AGATGAGTTT
TATGTTAGCC GTGTTGCCAA AGGACAAATT GCGTCTTTTG AATCAGGCCA AAAAAGTTAT
CAGTTAATCG TTAGTAAAGT TTATCCCGGT ATAAATAACG GCACCTTTAA AGTTGATTTC
AAATTACAAA GCCAACAAAT TGCTCAAACG TTACGCCTTG GTCAAAGTTT ACAAATGAAG
TTTAACTTGT CATCAAGTGA GTCAAAACTG CTACTCGCCA ATGGAGGATT TATACAGAGT
AGTGCTGGAA GTTGGGCATT TGTAGTTGAC CCCTCTGGTG CGACCGCTAG TAAGCGCACT
ATTCGTTTAG GTCGAAAAAA CCCACAAAGT ATTGAAGTTA TTTCTGGTTT GCTGGCCGGT
GATCGCGTGA TCACTTCTTC CTACGCCAGC TTTGCTGATG CACAGCAACT TAATCTTAGT
AACTAA
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| Protein sequence | MDKPISNKIK KTNYRNYLLF TLTICIAAAV LTIAKSSIDT GKTYNVEKQN LVLDTVKQST
FTEFLPLRGL VQPEETIFID TIDGGRVEEV FVQEGALVKQ GQAILKLSNT NLQLNVLARE
AEVSEQINNM RNTRLALEQN QLSLKRDVIE LDFSVLRLQK DFNRHKALIE KKIISQQAFE
RVEDELAFQI KYRETVKESQ EKEAILQSQQ LAQLEQSIQT LQSNLAISRS SLDKLIIRAP
KAGQLTFLDA RVGESKRDGE RLGQVDLIDQ YKVSAQVDEF YVSRVAKGQI ASFESGQKSY
QLIVSKVYPG INNGTFKVDF KLQSQQIAQT LRLGQSLQMK FNLSSSESKL LLANGGFIQS
SAGSWAFVVD PSGATASKRT IRLGRKNPQS IEVISGLLAG DRVITSSYAS FADAQQLNLS
N
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