| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3498 |
|---|
| Symbol | |
|---|
| ID | 3519108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3634617 |
|---|
| End bp | 3635081 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637285946 |
|---|
| Product | L-PSP family endoribonuclease |
|---|
| Protein accession | YP_270172 |
|---|
| Protein GI | 71278267 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.23917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACA AAATACTTAC CCTGTTAATC CCTATATTTG CACTAATAGG TGCTTTTAGT
TCTGCACAAG CATTCGCAGA TTCAAAACCA ATTCGCCAAA CCATTACTCC AACACAATAT
GGTTTTTCAC ACGCTAATGC GGTGATAGAA AGTAGTCCTA TGTTATACGT GTCAGGACAA
GTAGGCGCGA GTAAAACTGG CTCAAACGAT TTTTATTCGC AAGTCGACAG GTCATTCGAT
AGTTTACAAG CGGTACTAAA AAAATCAGGT GCAGATTTTA AAGATGTGGT CAAAATCACT
TTACTGATCA CCGATTACGA TCCTGATAAA CTTGCTTATA TGGTAAAAAA ACGCAAAGCC
ATATTTGGTG ATTCTCCTCC GGCAAGCACT TTGATCCCCG TTACTCGACT TTATACCGAT
GGAGTCATGT TCGAAATTGA TGCCATCGCA ATACTACGTA AGTAA
|
|---|
| Protein sequence | MSNKILTLLI PIFALIGAFS SAQAFADSKP IRQTITPTQY GFSHANAVIE SSPMLYVSGQ
VGASKTGSND FYSQVDRSFD SLQAVLKKSG ADFKDVVKIT LLITDYDPDK LAYMVKKRKA
IFGDSPPAST LIPVTRLYTD GVMFEIDAIA ILRK
|
|---|
| |