| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3239 |
|---|
| Symbol | |
|---|
| ID | 3522026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3367231 |
|---|
| End bp | 3369375 |
|---|
| Gene Length | 2145 bp |
|---|
| Protein Length | 714 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637285688 |
|---|
| Product | Slt family transglycosylase |
|---|
| Protein accession | YP_269929 |
|---|
| Protein GI | 71281554 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.538668 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAC AGTTAGTTGC AATAACTCTA GCAAGTTTTT TTACGCTATT TATCTTAACT
GGCTGTCAAG AGGCGCCAAC AGTAGAAGAA AATCCTAAAA CTGACATTAG CCAAAATGGG
AAACAAAACG ATCTCAAGCC TAAAACTCAA AAAGCAGTAA AAATTGTAAA ACAGAGAACA
ACCGCTAGAA CTTGGTCTGA GATAAAAGCA TCAGGGCAGA TCAACGCAGT AAAGCTTGAT
TGGAAGTTAG AATCTGCACT ACCACGAGCA GGTTCCACAG GGGCATATCA CACTACTTTA
TTACAGAGCT TTGCGGATAG CCGAGGTTTA AAAGTTAAGT GGCATAGGGT GAGCAACTTA
GCTGACATGT TTAAGAAATT ATCAGCGTTT GAGGTTGATA TTATTCCGCG ACATCTAACC
ATCACCACAA ATCGTCTTGA TAAATATAGT TTCACCTATC CACTTTTACG TGACAAAGAA
GTGGTCATCG CTAAATCGGG CAAACAAGAT TTTGATGAGG ATGATGACAA TAATATCTCT
CTTCCTATTG GCTCAGCTTA TATTGATAGT GTTAGTAAGC AATATCCTCA CTGGCAAGTT
AACATTATTG AAGATCATGT CAGCTCTCAG GAAGTGGCTG ATAGTGTCGT AGCTGGTCTA
ACTAAATACA CTGTCATCGA TGGTTTTGCT TTAGAAACAT TAAAACAATA TCGCGATGAT
ATTCAAAGTG TTTTCACTTT ACCTAAAGCG ATTAATCTTG CTTGGGCCGT TAATTTAAAT
AATGACACTT TTTTACATGA GTTAAATGAA TTCATATCGG TTCATCATGT TATGCAAATG
ATAGAGCCAG AGCGCACTAT CGATTTTAAA CAGTTAAGAA AAGATAAACT CCCTTTACGT
GTGATCACAC GTAATAGTCC TGAAACCTAT TTTTTATGGC GCGGCGAGTT ACTCGGTTTT
GAATATGAAT TGATGCGAAA ATTTGCTGAT ATCCATAAGG TGAAATTGGT TATTGTTGTG
GCGGATAGTT ACGAAGAAAT GCTAGAGCTA TTAGCTGAAG GGAAGGGAGA TATTATTGCC
GCAGGACTGT CTCGTACTAA AGCACGGACA AAACAAATAA CTAAAGCTAA GTTAGCGACA
AGTATTCGTT ATAACCGGGT AAAAGAGCAA CTGGTTGCTC ATCAAGATAG TGCACAAATA
AATGAAGCAA CGGATCTTAA AGGTCGCACC ATAACTATCA GAAAAAGCAG TAGCTTTTGG
GCTACAGCTC AAAGGTTAGC GACAGATTTT GGCGCCAATA TTGTTTTAGC AAATGAAGAT
ATTGCCACCG AAATATTAAT CGCTCAGGTC GCAGATAAAG AAATAGATTT AACCATCGCT
GATAGTAACT TAATCGCCAT TGAGAGCAGT TTTCGCTCAC AAATCATTAC CCCGCTAACC
TTTAAAGAAG ATGTACCTTA CTCTTATCTG GTCAGACAAA ATAACCCGCA ATTATTAGCC
TATTTAAATG AATTTGTTAG AAAGTACTAT CGTGGTACTT TTTATAATGT AGTTAAAAAT
AAGTATTTTT ATAATGAAAG ACTGCAAAAA AGTCATAACA AGTACCGTTT GGTGTCCGGC
TCAATTTTAT CGCCCTATGA CGATATTGTT CGCTTACATG TACAAGAGTA TAACTTTGAT
TGGCGACTTA TTGTCTCGCA AATGTATCAA GAAAGTCGGT TTGACCCGCT GGCAAGTAAT
TCCACTGGTG CCTTTGGTTT AATGCAAATG TTACCGCGCA CAGCAGCAGA GCTGGGAGTA
AAGGATTTAA AAGACCCTGA GCAAGCTATT GCATCTGGCG TGCAATATTT AGATTGGACC
CGCGATCGAT TCTCTAAGGA CTTGCCAGTA CAAGAGCAAA TATTTTTCTC TCTTGCCTCT
TATAATGCGG GTTATGGCCA TGTAAAAGAT GCGCAACGTT TAGCAAGACA GTTAGGGCTA
AGAAGTGATC GATGGTTTAA CAATGTTGAA AAAGCCATGT TATTACTTCA GCGTAGACAA
TATTATAACA AAGCACGCTT TGGTTATGTT CGAGGGAGAG AGCCAGTAAA TTACGTACGC
GATATTCATC AGCGCTATTT AAGTTATATT CGCATTACTG ATTAA
|
|---|
| Protein sequence | MNKQLVAITL ASFFTLFILT GCQEAPTVEE NPKTDISQNG KQNDLKPKTQ KAVKIVKQRT
TARTWSEIKA SGQINAVKLD WKLESALPRA GSTGAYHTTL LQSFADSRGL KVKWHRVSNL
ADMFKKLSAF EVDIIPRHLT ITTNRLDKYS FTYPLLRDKE VVIAKSGKQD FDEDDDNNIS
LPIGSAYIDS VSKQYPHWQV NIIEDHVSSQ EVADSVVAGL TKYTVIDGFA LETLKQYRDD
IQSVFTLPKA INLAWAVNLN NDTFLHELNE FISVHHVMQM IEPERTIDFK QLRKDKLPLR
VITRNSPETY FLWRGELLGF EYELMRKFAD IHKVKLVIVV ADSYEEMLEL LAEGKGDIIA
AGLSRTKART KQITKAKLAT SIRYNRVKEQ LVAHQDSAQI NEATDLKGRT ITIRKSSSFW
ATAQRLATDF GANIVLANED IATEILIAQV ADKEIDLTIA DSNLIAIESS FRSQIITPLT
FKEDVPYSYL VRQNNPQLLA YLNEFVRKYY RGTFYNVVKN KYFYNERLQK SHNKYRLVSG
SILSPYDDIV RLHVQEYNFD WRLIVSQMYQ ESRFDPLASN STGAFGLMQM LPRTAAELGV
KDLKDPEQAI ASGVQYLDWT RDRFSKDLPV QEQIFFSLAS YNAGYGHVKD AQRLARQLGL
RSDRWFNNVE KAMLLLQRRQ YYNKARFGYV RGREPVNYVR DIHQRYLSYI RITD
|
|---|
| |