Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3053 |
Symbol | |
ID | 3523356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 3189741 |
End bp | 3191327 |
Gene Length | 1587 bp |
Protein Length | 528 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637285504 |
Product | putative oxidoreductase |
Protein accession | YP_269751 |
Protein GI | 71278707 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAATA TAGCAAAATT CGATCTAGAC GATGATGATC TAGTAGTTAT TATTGGTTCG GGCGCTGGTG GTGGCACTGT CGCTAATGAG CTCGCGCAAA AAGGTGTTCG CTCGGTAGTA TTAGAAGCGG GTAAACGCTT CACACTTGAA GACTTAAAAA ACAGTGAATG GGAAATGTTC ATGAAGCTGT CGTGGTTGGA TAAACGGATT TCAGCCGGTG GTTGGCATCA TGCTAAAAAC CATTCAGGCT TACCCGCTTG GATTGTAAAA GGTGTTGGCG GTTCATCGAT TCATTGGGCT GGCGTATCGC TGCGTTTCAA GCCGCATGAA TTTAAAATGA AATCTACCAA TGGCGTCATA GAGGGAGCTA ACGTTGCTGA CTGGCCAATT TCATATGATG ATATTGCACC TTATTACGAA AAAGCCGAAG ATAAAATGGG AGTTACTGGC ACTAAAGCAA CGGGAACCCC AGATTTGCCT GAAAACAGCC ACACAAAATT GCACAGAGTT GCAGCAGAAC GTACAGGAAT GACCTTTTCC AATGCGCCCA TGGCGATAAA CTCAGTAGCT AGAGACGGAC GTCCGGCGTG TCAACAAATT GGTTTTTGTA TGCAAGGATG TCGAATTGGT GCTAAGTGGT CAACGATGTA TACAGAGATC CCAAAGGCTG AAGCGACGGG CTTATGTGAA ATTAGACCCA ATTCAATGGT GCTAAAAATA GAGCATGATG AAGATGGTCG AGCAAGTGGG GTACATTATG TCGATGAAAA TGGTAATAAA AAACTCCAAA AAGCACGGAT TGTTTGTGTC GCTGGGAATT CAATAGAATC ACCACGTCTT CTACTCAATT CAGCCTCTAA AAAATTCCCA GATGGCTTAG CAAATTCGTC AGGGCAGGTT GGTCGTAATT ACATGGGACA CGTAACTGGA GGCGTTTACG GTGTATTTCC AAAACCAGTC AATATGCATC GTGGTACGTC TGTCCCCAGT TTAATAACAA GTGAACAACG TAATGATCCA GATCGTGGTT TTGTTGCGGG TTATTCATTA GAAGTTTTAT CTCTAGGCTT AGGTTTTTTA TCGGCCTTTT TAAAACCCGG TACTAGTGGC TGGGGTAGAG AGGTATCTGA AGCATTAGAG AATTACCAAA ATATGGCAGG TGTCTGGATT TGTGGTGAAG ATCTACCCGT AGAGACTAAT CGCATCACTT TACACCCTAC TGAAAAAGAT CAAAATGGAC TACCCGTCCC CGTTATAACA AAAACAGATC ATAACAATGA TTTAGTGATG CGTAATCACG CCTACGCCCA AACGGCTAAG CTATACAAAT CAGTCGGTGC AACTAAATTA CATAACCTGC CTGCTTATCC AAATAGCCAC AATATGGGCA CAAACCGTAT GAGTGAAAAA GCTAGTGACG GCGTGGTAAA CAAATGGGGG CAGTCACATG ATGTCCCTAA TTTATTTATT TCAGACGGAA GTCAATTTGT AACAAGCGCT GCTGTTAATC CTACCCTAAC TATTGTTGCT TTGGCTATTC GACAGGCCGA ACATATCGCA AAGTTAGTCA AAACGAATGC ACTATAG
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Protein sequence | MTNIAKFDLD DDDLVVIIGS GAGGGTVANE LAQKGVRSVV LEAGKRFTLE DLKNSEWEMF MKLSWLDKRI SAGGWHHAKN HSGLPAWIVK GVGGSSIHWA GVSLRFKPHE FKMKSTNGVI EGANVADWPI SYDDIAPYYE KAEDKMGVTG TKATGTPDLP ENSHTKLHRV AAERTGMTFS NAPMAINSVA RDGRPACQQI GFCMQGCRIG AKWSTMYTEI PKAEATGLCE IRPNSMVLKI EHDEDGRASG VHYVDENGNK KLQKARIVCV AGNSIESPRL LLNSASKKFP DGLANSSGQV GRNYMGHVTG GVYGVFPKPV NMHRGTSVPS LITSEQRNDP DRGFVAGYSL EVLSLGLGFL SAFLKPGTSG WGREVSEALE NYQNMAGVWI CGEDLPVETN RITLHPTEKD QNGLPVPVIT KTDHNNDLVM RNHAYAQTAK LYKSVGATKL HNLPAYPNSH NMGTNRMSEK ASDGVVNKWG QSHDVPNLFI SDGSQFVTSA AVNPTLTIVA LAIRQAEHIA KLVKTNAL
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