| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2921 |
|---|
| Symbol | |
|---|
| ID | 3518551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3056459 |
|---|
| End bp | 3057958 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637285374 |
|---|
| Product | asparagine synthase family protein |
|---|
| Protein accession | YP_269621 |
|---|
| Protein GI | 71278878 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0367] Asparagine synthase (glutamine-hydrolyzing) |
|---|
| TIGRFAM ID | [TIGR01536] asparagine synthase (glutamine-hydrolyzing) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.458413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGTGGCT TTGTTGTTAG CGTTACTAAA AATCTAGTTG ATTTTAATGA AAAAGTTGGA
CCTGACACGT TGTTGCGTGG TTTAGACTCT TACAATTCAG ACGTTTTTTA TTCAAATGGT
TCATGTTTAT ATTTTGAGTT TTCGCATCTC TATATAACTG AACCAGAGGT AAACCAACCG
TTACAAAGTA ATTCTCAGGT TTTGGTATTG AATGGTGAGA TATATAACTA CCAAGAGCTA
GCAGCACGGT TGAATATTGA TCCGACTAAA TTTAACGATG TAAGTACTTT TTTTAAACAT
ATCGAATGCT ACGGATTACT TGATACCTTG ATGCGGTCAA ATGGAATGTA CTCAGGTTTC
CTATTTAATA AAATAACGGG CCAATGTGAA ATTTTTACAG ATCATGTTGG TAAAAAACCA
CTGTTAGTAT GGAATAGTAG AATTGGTTGG CATGTAGGTA CAGGAATAGA TTTTAACTAT
GTTGATGAAA AAACAACTGA AATAAAGGTA GTGCCACCAG GGATTTCGGC GTTTGATATA
AAAACGGGCA ATACCTTTAA AGAATATAGT CACTTGCCAA TAAAAGGTAA TGAATCAAAC
CTTATTGATA CTCTAGAGGA CGCGATATCG CTTCGTGTTC CAAAAAACAG GCCTTTTGCT
GTTGCACTTA GTGGCGGTTT AGATAGCTCT ATTATTGCCT ATATCTTAGA GGCTAGGTTA
AGTGAAAATG CACATTATTA TGTCGTTGGC GAAAGATACC CTGATTCAGT ATTAGCATTA
TTAGAACATT TGAATATTTG CCTCAGCCGT GTTCATTTAA TTAAGCCGCC TCCAGCAGAT
GAATTACTTA AGTTAATTAC AAAAACGTGC CATATCACTA AGAGTTATAA CCCATCAATT
ATATCTAATG GATTAGCTAC ACTACTTTTA TGCAAAGCGG TTCATCAAGA TGGTATTCGA
GTCATGCTAT CTGGTGAAGG TGCAGACGAG TTTTTCTGTG GTTATCAGGG CATGTACAAT
GGGCGCAATG ATCCGACTGA GATGAGAGCC AATTTAATTA AAGACTTGCA CTTCACTGAG
TTAAGGCGTT TAGATTTAAT AAGTGCAAGT TTTAGTGTTG AGGCTCGTTG CCCATTTCTA
GACCAACGAG TTACTCAAAT CGCAATGATG CTGGATGTAA AAAACCTTTG CGATATACCG
ATGAATATTG GTAAGACACT ACTAAGAGAC ACTTTCAAAC ACTTACTGCC ACATTCAATA
ATTAATGCGC CAAAAGAGTC CTTTGATATA ACTTCTGGTT TGCAAAAATT GGTAATAGAT
GAATTACAGA AAGAGTTTAA GTCAGAAAGA GTTGCTTTAA GGACTATTTT TGAAAAAACA
TTGGCTAACT ATCCCATAGT TAATCATCAT TATTTTTCTC ATTACCCAGC CTTTGATAAG
ATGATCGATC GGCGCGACTT AAAATATCGA AAGATCGAAT TTTCAATAAA TACCCAATAG
|
|---|
| Protein sequence | MCGFVVSVTK NLVDFNEKVG PDTLLRGLDS YNSDVFYSNG SCLYFEFSHL YITEPEVNQP
LQSNSQVLVL NGEIYNYQEL AARLNIDPTK FNDVSTFFKH IECYGLLDTL MRSNGMYSGF
LFNKITGQCE IFTDHVGKKP LLVWNSRIGW HVGTGIDFNY VDEKTTEIKV VPPGISAFDI
KTGNTFKEYS HLPIKGNESN LIDTLEDAIS LRVPKNRPFA VALSGGLDSS IIAYILEARL
SENAHYYVVG ERYPDSVLAL LEHLNICLSR VHLIKPPPAD ELLKLITKTC HITKSYNPSI
ISNGLATLLL CKAVHQDGIR VMLSGEGADE FFCGYQGMYN GRNDPTEMRA NLIKDLHFTE
LRRLDLISAS FSVEARCPFL DQRVTQIAMM LDVKNLCDIP MNIGKTLLRD TFKHLLPHSI
INAPKESFDI TSGLQKLVID ELQKEFKSER VALRTIFEKT LANYPIVNHH YFSHYPAFDK
MIDRRDLKYR KIEFSINTQ
|
|---|
| |