| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2879 |
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| Symbol | |
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| ID | 3520781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 3013937 |
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| End bp | 3015202 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637285332 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_269584 |
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| Protein GI | 71280316 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.506111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACAG CAAAAAATCC TCAGAAAAGC AAAGAACTTT ATGCCGCTAT TTCACTGATA
TTTTTATCTT TACTCATCTT AGTACTACTA TTTCTCAACA TTGATAAGCA TAAGGTAATC
AATTTAAATG CTGCAGATAT TAAGGTTGTG GATGACCGTG AAGTGCTGGG TGCATCGGTT
GCAAAAGTAG TAAAAACCAA TCATGGTCTT GAATTTACCT GCCAAATAAC AAAATCTCAT
CTAGCTCAGC CTTATTGTGA ATTAATCATA AATCTACAAG ATTTAAGCAA ACAATCCCCC
TTTACTGGTT TAGACTTATC TAATTATGAG CAAATCGGCT TATGGATTAA ACATAATCAC
CCTACACAAC CGGGTACTCG TATTGAGTTA CGTAACTTTA ATACTAATTA TTCTGTAAAA
GGAAACGAAA CAATATTAAA ACCCAATAGC GTAGAGTATT TAGAAGCATA CGTTACTAAC
CCTATTTGGT TAAAATCATC TGATTTTTCT ATCCCCCGAT GGTGGAATAA CAGCCATAAT
TTAACGCTAA ATAATGGTGG TACTGATTTT TCAAATATTT ATTCCATTGC CATAACACCC
ACCTTGCAAG TTCAGCCAGG GAAATATGAG TTAACCGTTG AACGCATTGA ATTAAAAGGC
AAGTATATTG GCACAACAAC ACTTGTTGCC GTTCTAATTA TGTTATGGAG CATAGCGTTG
GGCTATGTTA TTCGACGCTT AGTGCCAGCT AAAAAACTAG AGGTTGAAAT ACCTGAACAA
GCGAGTCATA CCATTGAATT TGGTGCCATG AGTTGCCCGC TAACAGGTGC ACTAAATCGC
ATTGGATTAC GAAAATGTTT TGATCAATTG GCGCCTACTG ATCTACAAAA ATTAAGCATT
ATCTTCCTCA ATATCGATTA TTTTGAGGAC CTTTATCCAA ATTATGGTCA TAAAACAGCA
GATAAAATTC TACAGCAGTT TGTCAATGAA GTTGATAATA CCTGTCGCTC TAGTGATACG
GTAGCTCGAT GGAATTCAGA AGAGTTTTTA TTAGTATGCC CAGACACTGA ATTATCTCAA
GCGATTGATG TTGCGGATAA AATAAGAGCA AGAATACAGA AAGCCACCTG GCCAAATGAT
ATTAAAATAA CCTGTAGTTC CGCTGTCGCA CAAATGTATG ATGAAGATCT TAATGATTTA
ATTACCCGTG CAAATAAAGC GCTGTATAAG GCAAAAAATA CCGGCAGTAA CAAAACAGCA
GCTTAA
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| Protein sequence | MQTAKNPQKS KELYAAISLI FLSLLILVLL FLNIDKHKVI NLNAADIKVV DDREVLGASV
AKVVKTNHGL EFTCQITKSH LAQPYCELII NLQDLSKQSP FTGLDLSNYE QIGLWIKHNH
PTQPGTRIEL RNFNTNYSVK GNETILKPNS VEYLEAYVTN PIWLKSSDFS IPRWWNNSHN
LTLNNGGTDF SNIYSIAITP TLQVQPGKYE LTVERIELKG KYIGTTTLVA VLIMLWSIAL
GYVIRRLVPA KKLEVEIPEQ ASHTIEFGAM SCPLTGALNR IGLRKCFDQL APTDLQKLSI
IFLNIDYFED LYPNYGHKTA DKILQQFVNE VDNTCRSSDT VARWNSEEFL LVCPDTELSQ
AIDVADKIRA RIQKATWPND IKITCSSAVA QMYDEDLNDL ITRANKALYK AKNTGSNKTA
A
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