| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2848 |
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| Symbol | sbcC |
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| ID | 3519332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 2975051 |
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| End bp | 2978977 |
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| Gene Length | 3927 bp |
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| Protein Length | 1308 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637285301 |
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| Product | exonuclease SbcC |
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| Protein accession | YP_269553 |
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| Protein GI | 71279169 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAATAT TAAGTTTACG CTTTGAGAAC ATCAATTCAC TCAAAGGCAG TTGGAAAATA
GATTTTAGTG AAGCTCCTTT TGATAACAAT GGTTTATTTG CTATTACCGG TCCTACTGGC
GCAGGTAAAA CCACTATACT CGATGCCATT TGTTTAGCGC TTTATCATCA AACACCGCGT
TTAACTGTGT CTAAAAAACA GAATCAGTTA ATGACTCGCC ACACCAGCCA TTGTATGGCT
GAAGTTGAGT TTGAAGTGAG AGGTCAAGGT TATAGAGCTT TTTGGAGTCA AAAACGCGCC
CGTAATAAAC TTGATGGTAA CTTATTAGAG CCTGTTGCAG AGTTAGCTAA ACTCGATGGC
ACCATAGTGT CTGATAAGCT TAAAATGGTG CGTAGTGATA TTAGTGAGTT AACAGGGCTT
AACTTCTCAC GTTTTACCAA ATCTATGATG CTATCTCAGG GAGAGTTTGC TGCCTTTTTA
ACATCACAAC CGAATGACCG TGCGCAATTA TTAGAGCAGC TTACCGGTAC TGAAATATAT
GGCGACATAT CTAAGCAAGT TTTTGATAAT CATCGCAGTG CCAGTGAAGC GCTAAAACTT
TTACAAGCGC AAAGCCAAGG TGTTTCTTTG CTTGATGATG AGCAAGTAAA GGCGCTTGAG
CAACAATTAA CAGAAATTAC CGAACAAGAG AAAACGGTAA ACGCGCAATT ACAACAAGCG
CAACAAGTTA AAGCCTGGTG CACTAATTTT TCGGTCAATG AACAAAACCA GCATGCAGCG
AAAACACAAC TACTTGAAAT AGAAAAGAAA GAGTTAGCCG CAAAACAAGA TCTTGATTTA
CTGACGCTGT CGTCTTTAGC TGAGCCGATT AAAGCACCGT ACGAAAAGAT GGTACATTAT
CGTGAGCAAT ACCAGCAAAC CTTACAACAA GTAACTAGTC AAACAGAACA ATTGGCGATA
CTTGACCAAG ATATTGTTGT GAGTGATGAA GCGTTAACGC TACTAAAAAA TCGTCATGTT
GAGGCTGAAG CACAACGCAA AGTAATTGAG CAAGTATTGC ATGATAAAAT TCAACCACTT
GACCATAACA TTACCCACCA ACAAAATGCA TTAACCGAAA CAAAAAACAC CATAGCCGAA
CAAAGCGAAA CACTTGGTGT GAATGCTAAT GCGTTGACTG CCTTAGAAGC AGAGCATCAA
AAAGCACAAG AGACTGTTCA ACAGCAACAA GCGTATTTAT CGCAAGGGCA GGCGTTAGCA
AAATTGCCAG AAAAATTGCC TTTATGGCAA AACCAATATC AGCAGTTAAG TCAACTACAA
GCTAATGTTG TGGCGTTAGT TAACGAGCAA GACAATACCG AAAAAGCGTT ATTAACCTTG
CAAACTCGAC AACAAGAGCA ACAACTTCAG ATCACGCAAA GTGAAGATGA GTTAAAGCAA
CTGAATAGCC GTAAACAGCT GATGGGTGAA AAAACACAGC AGCTAATTCA GCATAGCCAA
GCAGCTCAGG CGATCCTATC AAGTAGGGTT ACTAGTACTT CCACTAGTAC TGGAAATAAT
GATAAAGGTG AAGGTGTCGT TAACGAGTTA ACCGGTGGCA TGCTCAATCA AGCGATTCTA
GACCGTCAAA ATCAGCAACT TGCTTTAAAA CAAGCACAAC AGTTGGCGCA GCGTTTTCAT
GTCCTTACAC AAGAGCAACA GGGGTTATCT GCGCAGCAGA GTCAAGACAA GCAACAGCTG
GTTATCACTG AGCAAGCGCT GGTAAAACTT CGTCAACGTT ATAGCGCTAC TCAACAGCAG
AAAAAAGATG TAGAAACCTT ACTTGCTCAG CAGCAAACTA TTATGGCGCT GAGTGAACAT
AGAGCAAAAC TTCAGCCTGA AGAGTCTTGC CCATTGTGTG GTTCAACAGA TCACCCTGCG
ATTAATGAAT ATCGATCCCT TGACAGTGAC GAACATCAAC AGCGTTTAAG CCAATTAACA
CTTGAGCGAG CGCAACTTGA AAAGCAAGGT AAAGAGCTAA ATGGCGTTCA AGCAAATTTA
ACTGCGCAAC TTGAAATGCA GACAAATCGT TTGCAAGGCA TAACAAGCGA ACAAAGCAAT
TTAGCGCAAA ACTGGCAATC GCTAAATATT AATCAGTACG TTTTATTAAG CCAAAATGAA
CAGTCATTTT CATTACAAAA TGTTGATGTT GAACAGTCAA TTAATCATCA GCTAACGATG
GTGTTTGGGC AGCTTGAAGA GTTACTTTTA TTGCAAACGT CACTGCAAGA AAATAGCCAG
AACCAGCAAC AAAACAGTGA GCAAATTAGC CATTGTGAAA AGCAGTTGTC GACGCTATTT
AATCAGCTAC AACTATTGGA AGAACAAGGT AAGAATCAAC AAGGTTCAAA ACAAAAGTTT
ACTGAAGAAT TACGCTTGAA ACAACAGGCG TTTTTGGAGC TGAATGCTCA GTTGTTAGCT
GACATTAAAA CGACTGAAAT AACACTGCCT CTTGGTGGCG TAAATGAGAA AATAAAGGAG
CAAGACCAGG AACAAAATCT GGAACAAGAA CAAGCGCGGA AGCTAGTCAT TTGTATTGAT
GAAAAGTGGC TTGAATCATT GAGTAAGCAG GGCGCTGATT ATCAGCAAAC CGTGACGACT
CACCAAGCGG CTAAAACTCA GCTTGATAGT CTTGTAAATG ACCTCGGGTT GTTAAAGCAG
CAAGTTGTTC ATCAACAAAA TCAAGTTACC CAGATAAAAA GCCAATTAAC GCAACAAGAG
AACGATTTAA TACAAGATTA TTCGTTACGC GTTACTCACT TTGTTGAACT GGGTATTACA
GGTGAAGATA TGCAAGACTC TGTTTTATTA AGAGAAAGTA TTAATAGTCA ACGAGAGTTG
AGTGAAGCTG AGTTTACTGT AGCTGATCAA CGCCATAATG AGAAAAAAGC AGCTCAACAG
CTTAACAGAG GACAGTTAAC CACCTCGAAA TCTTTATTGG ATAATCTATT TCCTAAAAAT
GACAATGCAA AAAAGGACTG GTTAGCATTA CTTACTGACA GTAAGTTTAC TGATGAGGAA
GAGTTCTTAT TAGCGCTACT TAGCGCCGAG AGAAAGCATG ATTTAACTAA GCTCGCAAAC
GACATTGACG ATAGTAAAAA ACAAGCAAAA ATCTTGCTGT CACAAAGTGA AAAAATAACC
CTTGAATTGA ATGTTCAAAA AGATACGTTG AGTGAAAAAG GGGCTGTTGA TTTTGTTGAA
AGTTCAGTAT CAGAATCATT GGTAAATTTG TCAGATTTGT TGAAACAATG TCAGCAAAAT
ATCGGGCAGT TTAGCCAACA AATAGAACAA GACAATAGTA ACAAAATTCA ACAGAAAACC
TTGCTAGAAC AAATTAAATT AGCACAAGAT GCTTTGGATG ATCTTAGTCA CCTTAATGCA
CTTATTGGTT CAGCTGATGG TGCTAAATTT AGAAAGTTTG CACAAGGCTT AACACTCGCT
AATTTAGTCC ATCTTGCCAA CGCACAATTA GAACGTCTCT TTGGTCGCTA TCAACTTCAA
TGCCAACAAA ATGATACCTT AGAATTAGAG GTACTCGATA CCTGGCAAGG GGATACTGCG
CGTGATATTA AAACTTTATC TGGCGGTGAA AGCTTCTTAA TAAGTTTAGC GCTCGCTTTA
GCACTATCTG ATTTAGTCAG TAATAAAACC AGTATCGACT CTCTCTTCCT CGATGAAGGT
TTTGGCACCT TAGATAATAA CACCCTTGAA GTAGCACTTG ATGCGCTCGA TAACTTAAAT
GCTAGTGGCA AAATGATTGG TGTGATCAGC CATGTTGATG CCTTAAAAGA ACGCATTGGC
GTGCAGATTA AAGTTAAAAA ACTCAGTGGC CTGGGAGTCA GCAGTTTGGA TAAACAGTAT
GAGTTTCATG CTGAAACTGT TAGCTAA
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| Protein sequence | MRILSLRFEN INSLKGSWKI DFSEAPFDNN GLFAITGPTG AGKTTILDAI CLALYHQTPR
LTVSKKQNQL MTRHTSHCMA EVEFEVRGQG YRAFWSQKRA RNKLDGNLLE PVAELAKLDG
TIVSDKLKMV RSDISELTGL NFSRFTKSMM LSQGEFAAFL TSQPNDRAQL LEQLTGTEIY
GDISKQVFDN HRSASEALKL LQAQSQGVSL LDDEQVKALE QQLTEITEQE KTVNAQLQQA
QQVKAWCTNF SVNEQNQHAA KTQLLEIEKK ELAAKQDLDL LTLSSLAEPI KAPYEKMVHY
REQYQQTLQQ VTSQTEQLAI LDQDIVVSDE ALTLLKNRHV EAEAQRKVIE QVLHDKIQPL
DHNITHQQNA LTETKNTIAE QSETLGVNAN ALTALEAEHQ KAQETVQQQQ AYLSQGQALA
KLPEKLPLWQ NQYQQLSQLQ ANVVALVNEQ DNTEKALLTL QTRQQEQQLQ ITQSEDELKQ
LNSRKQLMGE KTQQLIQHSQ AAQAILSSRV TSTSTSTGNN DKGEGVVNEL TGGMLNQAIL
DRQNQQLALK QAQQLAQRFH VLTQEQQGLS AQQSQDKQQL VITEQALVKL RQRYSATQQQ
KKDVETLLAQ QQTIMALSEH RAKLQPEESC PLCGSTDHPA INEYRSLDSD EHQQRLSQLT
LERAQLEKQG KELNGVQANL TAQLEMQTNR LQGITSEQSN LAQNWQSLNI NQYVLLSQNE
QSFSLQNVDV EQSINHQLTM VFGQLEELLL LQTSLQENSQ NQQQNSEQIS HCEKQLSTLF
NQLQLLEEQG KNQQGSKQKF TEELRLKQQA FLELNAQLLA DIKTTEITLP LGGVNEKIKE
QDQEQNLEQE QARKLVICID EKWLESLSKQ GADYQQTVTT HQAAKTQLDS LVNDLGLLKQ
QVVHQQNQVT QIKSQLTQQE NDLIQDYSLR VTHFVELGIT GEDMQDSVLL RESINSQREL
SEAEFTVADQ RHNEKKAAQQ LNRGQLTTSK SLLDNLFPKN DNAKKDWLAL LTDSKFTDEE
EFLLALLSAE RKHDLTKLAN DIDDSKKQAK ILLSQSEKIT LELNVQKDTL SEKGAVDFVE
SSVSESLVNL SDLLKQCQQN IGQFSQQIEQ DNSNKIQQKT LLEQIKLAQD ALDDLSHLNA
LIGSADGAKF RKFAQGLTLA NLVHLANAQL ERLFGRYQLQ CQQNDTLELE VLDTWQGDTA
RDIKTLSGGE SFLISLALAL ALSDLVSNKT SIDSLFLDEG FGTLDNNTLE VALDALDNLN
ASGKMIGVIS HVDALKERIG VQIKVKKLSG LGVSSLDKQY EFHAETVS
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