| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2454 |
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| Symbol | helD |
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| ID | 3520645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2572199 |
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| End bp | 2575327 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637284909 |
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| Product | helicase IV |
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| Protein accession | YP_269170 |
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| Protein GI | 71280181 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCATTTCT ACAAGACGAA TGTTGTATTG ATGAGCAGTA ACCCTCAAAC GGTTGTCGAT
AGTATTGAAC AGCTATCTGA CTACTGTATC CCTTCCAGTT TTTTTCGTCG ATTCATTGGT
ATACCAACAG CGATAAAAAT CAGTGATTGT GGTGTAGTTA TTGACGTTGA AGATAGTTTG
ACCACTATCA AGTGGGAAGA GCTTATCGTT CCTCCAACTT TTCATCTCAG CTTTTTTGGT
CAAATAATTT CATTTAAAAC AGAAAGCAAA AGCTATGTTT TCACCATGCT TGCCTATAAA
TCAAAGCGTA AGCACAAAAA TAATTGTGAG CAACGTTGGG CAGCAGCCAA TATTCATCGT
GTTGAAACGT TATTAACCGC CATAGAAAGA TTTAAGACTA ATCGATATAT GCGTCGTTCA
ATAATTGAAC GTATTCAATT AGCATCGAGG CAAGAATTAG TCCGTTGGTT GCCGTGGCTT
AATTCAAACA GCTCAAGTAA ATCAACGAGT TCACTGACCA ATGTTATTGA AATAACACAA
CGATTATCGT ATTACCAACA TTGGCAGCAG CAGGGAATAG CTGATTGTCG AGAAAGCTAC
ATCAGTAAGC AACTTCAAAC TCATGAAGCC TTTTTTGATA ATGTCGAGTC TAATCCATTA
ACACTGTGTC AGCGCAGAGC CTGTATTATC GATAATGACA ATAATTTATT ATTAGCTGGC
GCGGGAACCG GAAAAACCAG TGTGATGATT GGTCGGACAG GTTATTTACT CAATAGCCTG
CAAGCGAAGA GCGATGAAAT ATTATTGTTA GCCTATGGCC GAAAAGCAGC TAATGAAATG
GATGAAAGAA TTAGAGATAA GTTATCGACT GATAAAATCA GCGCGACTAC TTTTCATCGT
TTAGGCCTGA GTATTATCGC TCAGGTTGAA GGGGGAAAAC CCAGTTTATC AGTATTAGCA
GATGATGAAA AAGCAAAATC TAAATGGATT CAAAGTTATT TTGAAAGACT CATTAAAGAA
GATAGGCAGT ATCGCAAGCT CATCCTCGAG TATTTTGGCA AGTACTATTA TGTTGAACGC
AGTGCTTTTG ACTTTAAAAG CAAAGGCGAG TACTACCAGT ACTTAACGGA CAATGATATT
CGCAGTTTTA AAGGTGAGCA AGTCAAAAGC TTCGGGGAGC TTTATATTGC CAATAGCTTA
TTCTCTTATG GCATAGAATA TCAGTATGAA GCTAAATACG CTTACGATGT AAAATCAATC
GAACGAAAAC AATATCAGCC AGACTTCTTT CTGCCTGAAT TCAATGTCTA TATTGAATAT
TATGGGATTG ATGAGAACGA AGATACAGCG CCATACATAG ATAAAGATGA ATACCATGAG
GGTATTCAAT GGAAACGTGA TACTCATAAT AAATTTAATA CTGTGTGTCT TGAATTTACC
TATGCGCAAC ATAAAACAGG TCAATTACTA AGTGCCTTAA AGGCATCATT GATTGAACTA
AAAAATCGTT CTGACTTATC ACCCGCTGAT TCCTTTCCTA GCGAAAAAAC ACCTAGCGAA
TTAATGTCTA GTGAACATAT ATCTGCTGAA CTAAGACCAA TTGAACTGAT ACCTAGCGAC
GTAATACTAG CCACACTCAA TGAGAGTGGC AGAATAACCG AGCTTGCTAA AACATTTACG
CAATTAGTTG GGCTTTATAA AGCTGCTTGT CTAGATACAA CTTTAGACTG CACCTTAGCG
AGTAGTTTAC AAAACAGTAT TATCGCTAAC TCGGTAGAGC CTAAACAAAC AGAAAAAGCC
TTAGCATTGC TCAAGCCTAT TTTAAGCGCT TATGAACAAC ACTTAGCACA GCACCATGAA
ATTGATTTTG AAGATATGAT TAATAAAGCG TTAACCTATG TTCAAGCAGG TCAATTTAAG
TCTCCCTGGC GTTATATCAT GGTTGATGAA TTTCAAGATA TATCCGAGCC ACGAGCACGT
TTGGTAAAAG CGTTACGTGA CAACAATAAA GAATGTTCTG TTTTTGCAGT AGGCGATGAT
TGGCAGGCTA TATACCGATT TAGTGGTGCT GATGTCACTT TAACGACTCA ATTCTCTAAT
TACTTTGGAT CAACAACTCA ATCAGAATTA GATCAAACTT TTCGATTTAA CAACCAAATT
GGCAAAGTTG CAACCGATTT TATTAGCAAA AACCCAGCAC AAATCACCAA AAAAATCACC
TCGTTGAAAC AAGTTAATGC ACCTGCGGTG TCGTTGCTCA AACGAGATAA CAGTCAATTT
CGCTCTCGAA AAACAGGACT GATCGATGAA ATGGCTAATG GTGCAATCGA CGATGTTTTA
GCGGCTATTT CAGCTAAAGT ATGTAAGCCT GTTACCGTTT ATTTATTAGC ACGTTTTTGG
TTTTTTTTAC CAAGTAACAT AGATCTTAAC AGGTTAAATA ATCAATATCC CTTACTGACC
ATTGATGCTC AATCTTTCCA TACTTCAAAA GGAAAAGAGG CCGATTATGT CATTATTGTT
GGTCTGAAAA AGGGCGCTCA TGGTTTTCCT TCTGAGAAAG TAACGCCTGC ACTTAATGAA
GCATTACTGG CGAAAAAAGA AAAATTTCCC TATGCAGAAG AGCGAAGATT ACTTTATGTA
GCGCTCACCA GAGCGAAAGA CAGGGTTTAT ATTATTGCAG ATATGACCGA ATCAAACCCC
TTTGTTAAAG AACTTGTGAA CGATCATCAA ATTGAACTGA ATGAATTTGA ATGTACAGCA
ACTCAATCAT TGGTAGACGA CTTACATTGT CTGGCTTGTA AAACAGGGCT ATTAAAAAAA
CGTACCGGCC GTTTTGGTAC CTTCTATGCC TGTTCTAATT CTCCTCGCTG TGAACATAAA
GAAAAGCCTT GTGCTAAATG TGAAAGTCCA ATGACACGCA AACGTTACCC AGGTTTTAAA
ACCTGCTTGA ATGACTTATG CAAAAGCTTG ATACCAACGT GCAGTTTATG TGATGCGGAA
ATGGTGTTAC GTACGAGCAA AAAAGGCGAG TTTTGGGGCT GTCGAAATTA TAAAGGAAAC
GATCCAATGA GTTGTAAGAA TGGCGTAGAT AATGCCAACG TTAACTGGCC TGAATTAGTT
GTAGATTAG
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| Protein sequence | MHFYKTNVVL MSSNPQTVVD SIEQLSDYCI PSSFFRRFIG IPTAIKISDC GVVIDVEDSL
TTIKWEELIV PPTFHLSFFG QIISFKTESK SYVFTMLAYK SKRKHKNNCE QRWAAANIHR
VETLLTAIER FKTNRYMRRS IIERIQLASR QELVRWLPWL NSNSSSKSTS SLTNVIEITQ
RLSYYQHWQQ QGIADCRESY ISKQLQTHEA FFDNVESNPL TLCQRRACII DNDNNLLLAG
AGTGKTSVMI GRTGYLLNSL QAKSDEILLL AYGRKAANEM DERIRDKLST DKISATTFHR
LGLSIIAQVE GGKPSLSVLA DDEKAKSKWI QSYFERLIKE DRQYRKLILE YFGKYYYVER
SAFDFKSKGE YYQYLTDNDI RSFKGEQVKS FGELYIANSL FSYGIEYQYE AKYAYDVKSI
ERKQYQPDFF LPEFNVYIEY YGIDENEDTA PYIDKDEYHE GIQWKRDTHN KFNTVCLEFT
YAQHKTGQLL SALKASLIEL KNRSDLSPAD SFPSEKTPSE LMSSEHISAE LRPIELIPSD
VILATLNESG RITELAKTFT QLVGLYKAAC LDTTLDCTLA SSLQNSIIAN SVEPKQTEKA
LALLKPILSA YEQHLAQHHE IDFEDMINKA LTYVQAGQFK SPWRYIMVDE FQDISEPRAR
LVKALRDNNK ECSVFAVGDD WQAIYRFSGA DVTLTTQFSN YFGSTTQSEL DQTFRFNNQI
GKVATDFISK NPAQITKKIT SLKQVNAPAV SLLKRDNSQF RSRKTGLIDE MANGAIDDVL
AAISAKVCKP VTVYLLARFW FFLPSNIDLN RLNNQYPLLT IDAQSFHTSK GKEADYVIIV
GLKKGAHGFP SEKVTPALNE ALLAKKEKFP YAEERRLLYV ALTRAKDRVY IIADMTESNP
FVKELVNDHQ IELNEFECTA TQSLVDDLHC LACKTGLLKK RTGRFGTFYA CSNSPRCEHK
EKPCAKCESP MTRKRYPGFK TCLNDLCKSL IPTCSLCDAE MVLRTSKKGE FWGCRNYKGN
DPMSCKNGVD NANVNWPELV VD
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