Gene CPS_2428 details

Gene Information

• Locus tag: CPS_2428
• ID: 3519210
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 2540197
• End bp: 2542254
• Gene Length: 2058 bp
• Protein Length: 685 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637284883
• Product: ABC transporter, ATP-binding/permease protein
• Protein accession: YP_269144
• Protein GI: 71279281
• COG category: [V] Defense mechanisms
• COG ID: [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAATC ATAATGACCT TAAAGTTGCA TTAATCGCAC TATTGCAACA GTTAGGTTTG 
CACTCTCAAG CGAATAGCAT TTCTGTAGAC ACGCGGCTAG ATAAATTAGA TACCACTGAA 
CTCTTAGATG TTTTAAGAAA ATACAGTCTT AATTTTCATG TGCGGCCAAT GAACAAAAAG 
GATATAGACC ATACGTTATT ACCTTTTTTG GTTATTCCTC AAGAAGATGA GGCTTTTGTT 
TCACGACGTA AAAATAATCA ATATGAGCAG TTAACGAGTG AACAGTCTTG GCAACGGGTT 
TCTTTTAGGA AAGATTTTGA GCAGGCAAAA GTCATTATTA TAGAAAACCT GCCAACTAAG 
AAATCTTCAA GTAAAACCTT TTCACAGCAT TTATCAAAAC AAAAGAAATG GTATAAACCA 
GTATTTTGGC TGAGTTTGTT ATCAAGTTTA ACGGGATTAG CAGTACCTTT ATTTACTATG 
TCTGTTTATG ACAGAGTCAT TGGTGGACAA GCACCCGATG TACTACCTCA AATAGCCTTA 
GGCGCCTTTA TCGCCTTAGC CATATTAATT GGCAGTCGGC TTATTAGAGC CAAAATAGTG 
GCCAGTGCTA GTAATAAGTT TGCGCGTGAC TTATCAGATA TAACCTTTAG TAGACTATTA 
AGAATGCCGC TGATGGTATT GTCTCGCGTT GGTCTGTCAA ATCACATCGC AAGAATGAGA 
AATGCGGAAA AAGTAAGAGG CATGGTTTCA GGACCCGGTG GTGCAGGGTT AATCGATTTA 
CCCTTCACCA TCATTGCTTT TTCAGCCATT GCCTTGTTAA GTGGCTGGTT AGTCTTAGTC 
CCTATTATTA TGCTGTTTGT CTATTACTTA GTGATGAAGT TACTGAATCG CTATACCGCA 
CGTGTAGTGC CGACCATAAA CAGTGAATAT CAAAACTCTA TTAATGAGTT ATCTAAAAAT 
GTGTTGCAAC TTAAAGCCAG TGGACAAACT GAAGCACGAA GAGTTGAGTT TTTTAGGCAG 
TGTCGAGAAT CTTGTAGACA AAACTTCCTT TTCGCAAAAC GTAACGGATT AAAAACGGCT 
ACGGCTCATG CATTGAGTAT GCTTACGGCG TTAGCGACTG TATTTACGGG GATCTTCTTA 
GTCTTAAATC AAAGCATTAC CGCTGGTGCT TTAATCGCCT GTGTGATGTT GATTTGGCGA 
ATTACCGGAC CTGCTCAATT AGCTTTTTCA TCAGGGCAAA AATTCACCAT GATGAGTGGT 
GCTATTCAAC AGTTCGATCG GTTCATGGGG GCAAGTCCAG AACAAAATGA ATACCGAATG 
GAGCAACCCG ACAGAGAAAC TGCGCCGACG ATTAAAATAA ACCAAATAAC CTTGAGATAC 
AGTGCGAATC AAGAGCCCGT ATTATCAGGT GTCTCGGCTG ATATTGAATC AGGTGATTGC 
GTCGCCGTGA TTGGCCCTAA TGCCTGTGGC AAAACATCCT TGTTATTGTC TTTACTTGGC 
GTAGTTGAAC CTCAGGCGGG TTTTATTATG GTGAATAATA AAAACTTAAA ACAATATGAC 
CCTGAAACCT TTAGAGAATA CGCAGGATAT TGCCCCGCAG AGCCTGATTT ATTTCCAGGT 
ACGTTAGCGG ATAACTTGCG CATTGCAAAA CCTGACGCGA CTGATGAAGA ATTAATTGCT 
GCATTAAAAC ATGCAGGAGG TGAATCATTA TTTATCGCGC TCAATTCAAA TTTGAACATC 
ATGTTAGAAA ACAACGCGTC AAACATGCTT TCGGCCGTAG AAGGGAGTTA TATAAACTTA 
GCGAGAGCAT TTCTTAAAAA GTCTAACTTT ATTATTTTAG ATGAACCCTT AGCAAACAGA 
AACCCTCAAG CAAGAAAAGC CTTTAGCAAT ACGATTTTAG CTTTAAAAGG AAAGGCGACA 
ATTGTCTTTA GTAGTCATGA TCCAGAGTTA ATCAAACTGG CAGATAAAGT GATTGTTTTA 
GATAAAGGTA GCGTTGTTTA TGCAGGACCA ATCCCTGAAA AAAATTCACA AGAAATGGAG 
TCATCAAATC ATGAATAA 

 

Protein sequence

MNNHNDLKVA LIALLQQLGL HSQANSISVD TRLDKLDTTE LLDVLRKYSL NFHVRPMNKK 
DIDHTLLPFL VIPQEDEAFV SRRKNNQYEQ LTSEQSWQRV SFRKDFEQAK VIIIENLPTK 
KSSSKTFSQH LSKQKKWYKP VFWLSLLSSL TGLAVPLFTM SVYDRVIGGQ APDVLPQIAL 
GAFIALAILI GSRLIRAKIV ASASNKFARD LSDITFSRLL RMPLMVLSRV GLSNHIARMR 
NAEKVRGMVS GPGGAGLIDL PFTIIAFSAI ALLSGWLVLV PIIMLFVYYL VMKLLNRYTA 
RVVPTINSEY QNSINELSKN VLQLKASGQT EARRVEFFRQ CRESCRQNFL FAKRNGLKTA 
TAHALSMLTA LATVFTGIFL VLNQSITAGA LIACVMLIWR ITGPAQLAFS SGQKFTMMSG 
AIQQFDRFMG ASPEQNEYRM EQPDRETAPT IKINQITLRY SANQEPVLSG VSADIESGDC 
VAVIGPNACG KTSLLLSLLG VVEPQAGFIM VNNKNLKQYD PETFREYAGY CPAEPDLFPG 
TLADNLRIAK PDATDEELIA ALKHAGGESL FIALNSNLNI MLENNASNML SAVEGSYINL 
ARAFLKKSNF IILDEPLANR NPQARKAFSN TILALKGKAT IVFSSHDPEL IKLADKVIVL 
DKGSVVYAGP IPEKNSQEME SSNHE