| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2386 |
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| Symbol | |
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| ID | 3518562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 2499511 |
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| End bp | 2500950 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637284843 |
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| Product | RND family efflux transporter outer membrane lipoprotein |
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| Protein accession | YP_269104 |
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| Protein GI | 71278889 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0682208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTCACT TAACAAGAAT AAGCTTTCCC ATAAAAAGCC TCTTTTTACT CCTGAGTTTA
TCCCTACCAA GCTGTGCTGT GTATCAAGGA GCAGAACTTA CAGAGCACCC AGTAGAAAAA
CTATCAAATA ACGTTGAAGA CGCAACACCA AACACAGTAA TAAAATCCCC GCGGAATAAA
GATTGGTGGA CAAATTTTAA CGAACCTCAA CTAACTTATT GGGTTGAAAC AAGCTTTAAA
AACAACCCTA GTTTACAAGC AACTTTTAGT AGACTAAATC AAACACAAGC AAAATTAAAT
ATTGTCAAAG CGAGTAATAA TCCAGATCTA AATTTATCAC TATCATCGAA AGTAAAGCGC
AATAAAAATT TAAACACTAC TCAAAATGAT AACTATCAAG TGGTGGGATT AAGTGCTAGT
TGGGAAATAG ACTTATGGGG AAAACTTAAT GCGGGTGAAG ATAAAGCATT ATGGGAGAAT
TCAGCGAGCA AAAACGATAT TAGTATTAAA GCAAACTTAA TTGCCGCTAA TGTAAGCAGT
GCTTGGGTTG GTTGGATGGT AGAAACTGAA AAAATAAAAT TGTTAACACA GCAGAGCAAA
CGAACAGAAC AGGGTTTAAA GATAATACAG CGTCGCGTAG CGCTTGGGAA AACCGGGAGA
AGTGATGCTT GGCAACAACA AGGTTTATTG GAATCATTAA CAACGCTAAC AAATAAAGCA
ATAGCAAAGT CAGCATTACA AAAACAAAAA CTCGCTTTGT GGTCAGGTAC TTTAGCTAAT
CAATTACCAA AAAGTCCTCA AGGAAAGTTA CCCACCCTTC TGTCCATCCC TGTATCAGGT
ATTGAACTAA AAGCATTAAA ATACCGACCC GACATTCAAA AATCTTATGC AAAATTACAA
GCAGCTGATG CCGAAGTTGC TATTGCAGTT GCTGAGCAGT TCCCACAATT AACCTTAAGA
GCCTCTTACT CTTCAACAAA TCAAAACGCA AAAAGTATAT TTAGCGATTG GCTTGGTGAC
CTTAGTGCAG GTTTAATCAT GCCCATTATT GATTATGGAC AACGAAAACA AACCGTAAAA
CAAAAGAAGT ATAACCTTAA AGCTTTGCAA TATGACTATT TACAAAAATG GCAACAAGCA
ATTTTTGAGG TTGAAGAAGC ATTAATTATC GCTAATGAAT ATCAGCAGAT AACCATTAGT
TTGGCTTTGC AGCTTGAACT TGCTAAAAAA ATTCAACAAC TTAAAAAGAG ATATTACCTT
AATGGGCAAG CACAATACCT ACAGTTACTA CAAGCACAGG ACAGTACACT AAAACTTGAG
CGTCAGCTTA TTGATAGTAA GCATGCACAG CTTGAATCTC GCTTATCCTT GTATAGCGCA
ATTAGTCATG GTGATTTTAT ATCACTAGAG CAAAAAGAAG GAAGTAGTCA TCATGACTAA
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| Protein sequence | MLHLTRISFP IKSLFLLLSL SLPSCAVYQG AELTEHPVEK LSNNVEDATP NTVIKSPRNK
DWWTNFNEPQ LTYWVETSFK NNPSLQATFS RLNQTQAKLN IVKASNNPDL NLSLSSKVKR
NKNLNTTQND NYQVVGLSAS WEIDLWGKLN AGEDKALWEN SASKNDISIK ANLIAANVSS
AWVGWMVETE KIKLLTQQSK RTEQGLKIIQ RRVALGKTGR SDAWQQQGLL ESLTTLTNKA
IAKSALQKQK LALWSGTLAN QLPKSPQGKL PTLLSIPVSG IELKALKYRP DIQKSYAKLQ
AADAEVAIAV AEQFPQLTLR ASYSSTNQNA KSIFSDWLGD LSAGLIMPII DYGQRKQTVK
QKKYNLKALQ YDYLQKWQQA IFEVEEALII ANEYQQITIS LALQLELAKK IQQLKKRYYL
NGQAQYLQLL QAQDSTLKLE RQLIDSKHAQ LESRLSLYSA ISHGDFISLE QKEGSSHHD
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