| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2378 |
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| Symbol | |
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| ID | 3522162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 2481955 |
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| End bp | 2484186 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637284835 |
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| Product | TPR domain-containing protein |
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| Protein accession | YP_269096 |
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| Protein GI | 71281690 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGATTT TTTCAATCAC TATTTTGTTC TTTTTGAGTT CATTCGCCCC CCATTCTTTT
GCGAACAACG ATCCAGTCCC CTCTGAAAAA TTTATTGGCA AAGCTGCCTG TGCTAATTGC
CATCAGCAGC AGTTTAACGA TTGGAAAAAC TCTCACCATG ACTTGGCTAT GCAGCCAGTG
AATAAAAACA CTGTACTGGG AGATTTTGAT CAGACGAAGT TTTCGTTTCA CAACACCACC
GCTGAATTTT ATCGCCAAAA TGAACAGTAC TTTGTCAAAA CCCAAAATAA AAAAGGTGTA
CTAACTGAAT ATAAAATCTT ATATACCTTT GGTTTTACTC CATTACAGCA GTATCTAGTA
GACTTTGGGC AAGGAAGGTT ACAAGCTTTA TCAATCGCTT GGGATAGCCG CCCAAAAACT
GAAGGCGGCC AACGTTGGTA CCACCTACAA GCCGACCAAG GGGAGATCCC CTTTGATGAT
ATGTTACATT GGACAGGTAG TTATTTTAAC TGGAACAGTC GCTGCGCTGA ATGCCACTCT
ACTGGCTTTG AAAAAAACTT TGATGATGAG AAGTTAATTT ACAATAGTAC TTGGACCGAT
ATTGATGTTG CTTGTGAGTC TTGTCATGGT GCAGGTAAAG ACCACCAAAT GTGGGCAAAA
AATGGTGCTA GTATAAAACA GAATAATGGT TTAATTAACC TAGCGCCTAA AGGGTTATGG
CAAATAATTC CTGACAGAAA TACTGCACAA TTCACACCTA ACAAAGACCA TGAGAAGAGT
TTACAACTTG ATACCTGTGC ACACTGTCAC AGCAGACGCA GTGCACTGAC AGAAAACTAT
TTAGGTAAAA AATTTGATGA AAGCCATCAT CTACAATTAC TAGATGAAAA TATTTATCAT
AGTGATGGTC AAATTCAAGA TGAAGACTAT GTATATGGAT CTTTTATTCA AAGTAAAATG
TATCACGAAG GCGTAGTCTG TAGTAATTGC CATGAACCTC ATAGCTTGAA GTTACGCGCT
CCTGACAATG CGGTTTGTAC TCAATGTCAT AAACGCGAAG TATTTGATAC ACCTAAACAT
CATCAGCATG ATATTACTAA TACAGGCGCA CAATGTGTAA ATTGTCACAT GCCCGAAACT
ACCTACATGA GCGTAGACCC AAGGCGAGAT CATAGTTTGC GTATTCCTCG TCCTGATTTA
TCAAAAAAAC TTGGCTTGCC TAATGCTTGT AATACTTGCC ATCAAGAGCA ATCAATCGAT
TGGGCGGTAA AAAAAGTTGA GAGCTGGTAT CCAACAAGTC AAAAACGCAT GACCCATTTT
GCTAAAACAC TCTATGCCGG CAGAAAGCAG TGGGCTACCG GTCATGATTT ATTGAATAAA
TTAGCACACG ATACGACACA GGCGAGCATT GTTAAAGCAA GCGCGCTAAG TTTATTAACG
CAATACCCTA CTCAAGAAAC CCTTAACACC GCGATTGCTT CTTTAAAAAA TACTGACAGT
AAAATACAGC GTTCAGCACT TGGTATTATA GAAATGCTAC CAACAGAACA AGCATATCAA
CATTTAGCGT CATTGCTTGA TACGAGTAAT TCATATAGCA ATAAAGCCAT TAGAATGGAG
GTCGCCAGAG TTTTAGCTGC AGTGCCTTTA GAACAACTAC CTAAAGTGCA AGCGCAGCAA
TTAGCTAATG CTCAAAATAA TTACATTATC AGTCAACTTG TTAATAATGA TACCGCTAAT
AGCCACCAAA ATTTAGCGCT ATTTTATGCT AAACAAGGTC AAATATCTAA GGCTGAACAG
CTTTATAAAA AGGCGTTATC CATAAATACT AAGTTTGTAC CTGCCATGGT GAACTTAGCT
GACTTGTATC GTCAAACAGG TAAAGATAGC CAAGCCACAG TCTTGTTATT TAATGCAGTA
AAAGTTATGC CCGAAAATGC TATGGCACAA TTTGCGTTAG GCCTACAGCA AGTTAGGCAA
AAAAATATGA TTGTGGCAAT AAAGCACCTG CAGATAGCGG CTGGATTATC CCCTAACCTA
CCCTATTATC ATTATGTTTA TGCGGTTGCC TTAGATACCA ACAATGAAAC AAAGAAGGCA
GTAGTTGTTT TAGAAAACTC ACTAAGAGTT AACCCTAATG ATCAACAACT TATATCCTCC
TTGATCAGTT ACTATCAAAA GTTAGGAGAC ATAAAAAAAG TACAGTTTTA CATGGCGCAG
TATCAACAGT AA
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| Protein sequence | MQIFSITILF FLSSFAPHSF ANNDPVPSEK FIGKAACANC HQQQFNDWKN SHHDLAMQPV
NKNTVLGDFD QTKFSFHNTT AEFYRQNEQY FVKTQNKKGV LTEYKILYTF GFTPLQQYLV
DFGQGRLQAL SIAWDSRPKT EGGQRWYHLQ ADQGEIPFDD MLHWTGSYFN WNSRCAECHS
TGFEKNFDDE KLIYNSTWTD IDVACESCHG AGKDHQMWAK NGASIKQNNG LINLAPKGLW
QIIPDRNTAQ FTPNKDHEKS LQLDTCAHCH SRRSALTENY LGKKFDESHH LQLLDENIYH
SDGQIQDEDY VYGSFIQSKM YHEGVVCSNC HEPHSLKLRA PDNAVCTQCH KREVFDTPKH
HQHDITNTGA QCVNCHMPET TYMSVDPRRD HSLRIPRPDL SKKLGLPNAC NTCHQEQSID
WAVKKVESWY PTSQKRMTHF AKTLYAGRKQ WATGHDLLNK LAHDTTQASI VKASALSLLT
QYPTQETLNT AIASLKNTDS KIQRSALGII EMLPTEQAYQ HLASLLDTSN SYSNKAIRME
VARVLAAVPL EQLPKVQAQQ LANAQNNYII SQLVNNDTAN SHQNLALFYA KQGQISKAEQ
LYKKALSINT KFVPAMVNLA DLYRQTGKDS QATVLLFNAV KVMPENAMAQ FALGLQQVRQ
KNMIVAIKHL QIAAGLSPNL PYYHYVYAVA LDTNNETKKA VVVLENSLRV NPNDQQLISS
LISYYQKLGD IKKVQFYMAQ YQQ
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