Gene CPS_2378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_2378 
Symbol 
ID3522162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp2481955 
End bp2484186 
Gene Length2232 bp 
Protein Length743 aa 
Translation table11 
GC content39% 
IMG OID637284835 
ProductTPR domain-containing protein 
Protein accessionYP_269096 
Protein GI71281690 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID[TIGR01905] doubled CXXCH domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGATTT TTTCAATCAC TATTTTGTTC TTTTTGAGTT CATTCGCCCC CCATTCTTTT 
GCGAACAACG ATCCAGTCCC CTCTGAAAAA TTTATTGGCA AAGCTGCCTG TGCTAATTGC
CATCAGCAGC AGTTTAACGA TTGGAAAAAC TCTCACCATG ACTTGGCTAT GCAGCCAGTG
AATAAAAACA CTGTACTGGG AGATTTTGAT CAGACGAAGT TTTCGTTTCA CAACACCACC
GCTGAATTTT ATCGCCAAAA TGAACAGTAC TTTGTCAAAA CCCAAAATAA AAAAGGTGTA
CTAACTGAAT ATAAAATCTT ATATACCTTT GGTTTTACTC CATTACAGCA GTATCTAGTA
GACTTTGGGC AAGGAAGGTT ACAAGCTTTA TCAATCGCTT GGGATAGCCG CCCAAAAACT
GAAGGCGGCC AACGTTGGTA CCACCTACAA GCCGACCAAG GGGAGATCCC CTTTGATGAT
ATGTTACATT GGACAGGTAG TTATTTTAAC TGGAACAGTC GCTGCGCTGA ATGCCACTCT
ACTGGCTTTG AAAAAAACTT TGATGATGAG AAGTTAATTT ACAATAGTAC TTGGACCGAT
ATTGATGTTG CTTGTGAGTC TTGTCATGGT GCAGGTAAAG ACCACCAAAT GTGGGCAAAA
AATGGTGCTA GTATAAAACA GAATAATGGT TTAATTAACC TAGCGCCTAA AGGGTTATGG
CAAATAATTC CTGACAGAAA TACTGCACAA TTCACACCTA ACAAAGACCA TGAGAAGAGT
TTACAACTTG ATACCTGTGC ACACTGTCAC AGCAGACGCA GTGCACTGAC AGAAAACTAT
TTAGGTAAAA AATTTGATGA AAGCCATCAT CTACAATTAC TAGATGAAAA TATTTATCAT
AGTGATGGTC AAATTCAAGA TGAAGACTAT GTATATGGAT CTTTTATTCA AAGTAAAATG
TATCACGAAG GCGTAGTCTG TAGTAATTGC CATGAACCTC ATAGCTTGAA GTTACGCGCT
CCTGACAATG CGGTTTGTAC TCAATGTCAT AAACGCGAAG TATTTGATAC ACCTAAACAT
CATCAGCATG ATATTACTAA TACAGGCGCA CAATGTGTAA ATTGTCACAT GCCCGAAACT
ACCTACATGA GCGTAGACCC AAGGCGAGAT CATAGTTTGC GTATTCCTCG TCCTGATTTA
TCAAAAAAAC TTGGCTTGCC TAATGCTTGT AATACTTGCC ATCAAGAGCA ATCAATCGAT
TGGGCGGTAA AAAAAGTTGA GAGCTGGTAT CCAACAAGTC AAAAACGCAT GACCCATTTT
GCTAAAACAC TCTATGCCGG CAGAAAGCAG TGGGCTACCG GTCATGATTT ATTGAATAAA
TTAGCACACG ATACGACACA GGCGAGCATT GTTAAAGCAA GCGCGCTAAG TTTATTAACG
CAATACCCTA CTCAAGAAAC CCTTAACACC GCGATTGCTT CTTTAAAAAA TACTGACAGT
AAAATACAGC GTTCAGCACT TGGTATTATA GAAATGCTAC CAACAGAACA AGCATATCAA
CATTTAGCGT CATTGCTTGA TACGAGTAAT TCATATAGCA ATAAAGCCAT TAGAATGGAG
GTCGCCAGAG TTTTAGCTGC AGTGCCTTTA GAACAACTAC CTAAAGTGCA AGCGCAGCAA
TTAGCTAATG CTCAAAATAA TTACATTATC AGTCAACTTG TTAATAATGA TACCGCTAAT
AGCCACCAAA ATTTAGCGCT ATTTTATGCT AAACAAGGTC AAATATCTAA GGCTGAACAG
CTTTATAAAA AGGCGTTATC CATAAATACT AAGTTTGTAC CTGCCATGGT GAACTTAGCT
GACTTGTATC GTCAAACAGG TAAAGATAGC CAAGCCACAG TCTTGTTATT TAATGCAGTA
AAAGTTATGC CCGAAAATGC TATGGCACAA TTTGCGTTAG GCCTACAGCA AGTTAGGCAA
AAAAATATGA TTGTGGCAAT AAAGCACCTG CAGATAGCGG CTGGATTATC CCCTAACCTA
CCCTATTATC ATTATGTTTA TGCGGTTGCC TTAGATACCA ACAATGAAAC AAAGAAGGCA
GTAGTTGTTT TAGAAAACTC ACTAAGAGTT AACCCTAATG ATCAACAACT TATATCCTCC
TTGATCAGTT ACTATCAAAA GTTAGGAGAC ATAAAAAAAG TACAGTTTTA CATGGCGCAG
TATCAACAGT AA
 
Protein sequence
MQIFSITILF FLSSFAPHSF ANNDPVPSEK FIGKAACANC HQQQFNDWKN SHHDLAMQPV 
NKNTVLGDFD QTKFSFHNTT AEFYRQNEQY FVKTQNKKGV LTEYKILYTF GFTPLQQYLV
DFGQGRLQAL SIAWDSRPKT EGGQRWYHLQ ADQGEIPFDD MLHWTGSYFN WNSRCAECHS
TGFEKNFDDE KLIYNSTWTD IDVACESCHG AGKDHQMWAK NGASIKQNNG LINLAPKGLW
QIIPDRNTAQ FTPNKDHEKS LQLDTCAHCH SRRSALTENY LGKKFDESHH LQLLDENIYH
SDGQIQDEDY VYGSFIQSKM YHEGVVCSNC HEPHSLKLRA PDNAVCTQCH KREVFDTPKH
HQHDITNTGA QCVNCHMPET TYMSVDPRRD HSLRIPRPDL SKKLGLPNAC NTCHQEQSID
WAVKKVESWY PTSQKRMTHF AKTLYAGRKQ WATGHDLLNK LAHDTTQASI VKASALSLLT
QYPTQETLNT AIASLKNTDS KIQRSALGII EMLPTEQAYQ HLASLLDTSN SYSNKAIRME
VARVLAAVPL EQLPKVQAQQ LANAQNNYII SQLVNNDTAN SHQNLALFYA KQGQISKAEQ
LYKKALSINT KFVPAMVNLA DLYRQTGKDS QATVLLFNAV KVMPENAMAQ FALGLQQVRQ
KNMIVAIKHL QIAAGLSPNL PYYHYVYAVA LDTNNETKKA VVVLENSLRV NPNDQQLISS
LISYYQKLGD IKKVQFYMAQ YQQ