| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2113 |
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| Symbol | |
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| ID | 3518558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2199237 |
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| End bp | 2202104 |
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| Gene Length | 2868 bp |
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| Protein Length | 955 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637284571 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_268839 |
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| Protein GI | 71278885 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATTTTT TTTATAAACT GACCAGTTAC ATTATTTTAA TTACTTTGTT TGTAGTTATT
TTCAGCCAAA CAGTGTTTGC AGAAAAGGCT GACATAACAG TTAAGCAACC ATTAACCATT
GCTATTAATG AAACTTCTTT CCCATATCAC TCTATTGACG AGCAAGGTAA TGCTATTGGT
TTAATGGCAG ATATGTGGCG TTTATGGGCT AAAAAGCAAC AAATTGAAGT ACAGTTTATT
GTGCTACCTT GGCTAGAGAC ACTAAGTGAA GTAGCTAAAG GAAATATTGA TATTCATGGT
GGCTTATCAA TTGTTGATTC CAGGCGAGAA ACGCTACAGT TTTCCCAACC ACTCTTTTCT
ATTTATACCC ACCTTTACGT AAATCAACAA CTCAGTAATG TTAACAACCT AGCAGATTTA
AAACCCTACA GCATTGGGGT AGTGAAAGGC TCAGCTCATA TTGAGAACCT GCAAAAGTAT
CATCCTGAGT TTGCTTTGAA AACGTATGAT AATCGGCATG ACCTATACAG AGGAGCCCTA
AATAACGAAA TTTTAGTGTT TACAGGTTTA GAAAAACTAT CTGATAATTT TCCTGATTAC
GATACTTTAA GGCAGCGTTT CCCTCCTCAT AAGGTTTTAC GATATCAGCA AGGTGATTAT
GGGGTAGCGG TGGCTAAGGG GAATAATTCG CTACTTAATT TAATTGAACA AGGGTTTGCA
CAAGTATCAA GAGAAGAGCG AGCAGCCATT GAGCGAAAAT GGCTAGGTTT GACTAAGCAA
AAAGACAGTT TATTGGTCGC CTTTTCATCA CATTACCCTC CTTATATGGG GGTTAGCCCT
TCAGGTGAAC CGCAAGGATT ATTGATTGAG GTCTGGCGCT TATGGTCTAA AAAAGTAGGG
ATTAATGTTG AGTTTGTTCC CCGTGATATG ACTGAAGGGT TAGATCTTAT AACAGAGCAA
AAAGCCGACA TACTCTTGGC TTACCCTGAT CATGTTAAAA CATCTAATGA TATAGCTTTT
GCCAATCCAA TTTACTCTTC TACAGTGGAA GTTTTTCTCA ATAATAGAAT TAAAGACGTT
AAAGGTAAGC CATTTGAGTC ATTAGAGCAA TTTAATCAAC AGTTCAACGG CGGTGTCATT
GGTATTTGGC AAGACTCTAC TTTTAAAGAC CAATTGTTAG CACAATACCC ACAGTTGAAT
GTTCGCTATT TTAGTAGCTT GATTACGATG TTGGATGCTG CTGAGCGAGA TGAAATATCA
GGCATCGTCG GATTAGTTGA TTTAATTAGT GCAAGGTTAG TGCAAAGTAA CTTGCAAACA
CTTTTTTATC GCTTAGATAG TCCTGTCATT ACTTTAAAAC TATCGCCTGT TATTCATCAT
AAAAATAATA AACTTGTGGA AATCGTTAAT AGAGGATTTA ACGAGTTAGA TATTAATAGC
CTTATTAAAA TTGAAGATAG GTGGTTGAAC GGTAACGCGG GAGAACACTA TTATAAAAAA
CAAGCACAAA AAATTATGTT AAGTGATGCC GATAAAGCCT TCTTAGCATC CCACGGAAAA
ATTAACTTAG GTATCATTAA GAATTTATCG CCGATTGAGT TTATTGACGA GCAAGGTAAA
TTTTCAGGTA TTAATCGTGA TATTACGCAT TTAATTAGTG ATAGCACTGG TATTAAGTTC
AACTACCTGC CTTTTGATAG TTGGCAACAG TTATATAAAG CATTATTAGA TAATAAAATA
GATATGCTTG GCAGTATTAC GCCAACAGTA GAGCGTGAAA AACTGCTGAT ATTCACTGAT
AGTTATTGGC AAATGCCATG GGTAATGGTA CATCCACAAT ATTATGGTAG AAAATCCAAA
CTTGAAGATT TTTATGGTAA ACAAGTCGCT ATCGTCAAAG GCTATTATTT AATTGCCAAG
CTAAGAAAAA TACACCCCTT AATCACTTTT AAATTAGTGG ATAACCGAGA GCAAGCACTT
GTTGCGCTAC AACAGGAACG AGTTGATGGT TTCATCACGA CTATGGCCTC GGCGACACAA
TTATTGAAGC AGGAAAACAT CGTCACTTTG ATGATATCAA TGATGGAAGA TGTCAGCTTA
GAGAAAAGTC ATTTTGGAAT AAACAAGCAG TTGCCGCTAT TAAAAGGAAT AATTAATAAG
GGGCTGTTAT CGATCACTGA AAAAGAGAAA CAAGCCATTT ACGATAATTG GTTTTCCTTA
GCAATAAATA CTGGGCTTGA TAAAAATGTG GTCTTACAGG TTGGGGCTCA AATTGGTGTC
ATCATTTTAT TGGTGCTCGG TGTTATTGTC ATGTGGAATA GACGATTACA AGTTGAAATA
AAACACCGAG AGCAGCTTGA AAAAATTATG AAACATATGG CAACACATGA TGAACTAACC
GGGCTTGCTA ACCGGGTATT GTTAAAAGAT AGATTAAGTA CAGCGATAGC GTTCCATCAA
CGACAATCCC TTAAAATGGC AGTATTATTC ATTGATTTAG ATGGTTTTAA AAATATCAAC
GATACTCATG GGCATGGTGT CGGAGATGAA TTGTTGCAAC AAGTAGCTCT TCGTTTACAG
GGGTGTGTAA GAAGTTCAGA TACGGTAGTA CGTTTTGGCG GTGATGAGTT TGTTTTACTA
CTTACCGGTC TAAATAGTCC TAATGAAGCG GCCTATGTCG CCGAAAAAGT ATTAAGGATG
ATGCAAAAAG AGTTTGAACT ATCGAAAACC AATGCCTTTA TTGGCTGTAG TATTGGTATA
GCTATGTATC CAAATGATGG TGATAACGAC ACCGACTTAC TTAAAATTGC TGATACCATG
ATGTACAAGG TAAAAGCTGC CGGTAAAAAT CATTATATTT TTAACTAA
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| Protein sequence | MNFFYKLTSY IILITLFVVI FSQTVFAEKA DITVKQPLTI AINETSFPYH SIDEQGNAIG
LMADMWRLWA KKQQIEVQFI VLPWLETLSE VAKGNIDIHG GLSIVDSRRE TLQFSQPLFS
IYTHLYVNQQ LSNVNNLADL KPYSIGVVKG SAHIENLQKY HPEFALKTYD NRHDLYRGAL
NNEILVFTGL EKLSDNFPDY DTLRQRFPPH KVLRYQQGDY GVAVAKGNNS LLNLIEQGFA
QVSREERAAI ERKWLGLTKQ KDSLLVAFSS HYPPYMGVSP SGEPQGLLIE VWRLWSKKVG
INVEFVPRDM TEGLDLITEQ KADILLAYPD HVKTSNDIAF ANPIYSSTVE VFLNNRIKDV
KGKPFESLEQ FNQQFNGGVI GIWQDSTFKD QLLAQYPQLN VRYFSSLITM LDAAERDEIS
GIVGLVDLIS ARLVQSNLQT LFYRLDSPVI TLKLSPVIHH KNNKLVEIVN RGFNELDINS
LIKIEDRWLN GNAGEHYYKK QAQKIMLSDA DKAFLASHGK INLGIIKNLS PIEFIDEQGK
FSGINRDITH LISDSTGIKF NYLPFDSWQQ LYKALLDNKI DMLGSITPTV EREKLLIFTD
SYWQMPWVMV HPQYYGRKSK LEDFYGKQVA IVKGYYLIAK LRKIHPLITF KLVDNREQAL
VALQQERVDG FITTMASATQ LLKQENIVTL MISMMEDVSL EKSHFGINKQ LPLLKGIINK
GLLSITEKEK QAIYDNWFSL AINTGLDKNV VLQVGAQIGV IILLVLGVIV MWNRRLQVEI
KHREQLEKIM KHMATHDELT GLANRVLLKD RLSTAIAFHQ RQSLKMAVLF IDLDGFKNIN
DTHGHGVGDE LLQQVALRLQ GCVRSSDTVV RFGGDEFVLL LTGLNSPNEA AYVAEKVLRM
MQKEFELSKT NAFIGCSIGI AMYPNDGDND TDLLKIADTM MYKVKAAGKN HYIFN
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