Gene CPS_1998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_1998 
Symbol 
ID3519306 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp2067244 
End bp2068902 
Gene Length1659 bp 
Protein Length552 aa 
Translation table11 
GC content39% 
IMG OID637284460 
Productputative membrane-bound lytic murein transglycosylase 
Protein accessionYP_268728 
Protein GI71279182 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTATT TATTATTACC CGTTGTAGTT CTTTTAGCCG GCTGTCAAAG CCTATCCCAA 
AGTGATGGTA ATGCCATTAC TGACAATTCA GATTCGCAAG TTGAAACTGC TCATCCAGTT
GAGATTAATC AAGCGTTATT AGCAGATGAA AGCATTGACG TTATCCATCC TGTTGCTGAT
GTTGACTTCT CTTTAAATAA TACCTTAAAA GATCAAAAAG CTATTGATGA GAATAATATT
TGGCCACGCA TTCGTAGCCA ATTAACGTTT GATATTCCGA ATCAAAAACG TCTTGTCTCT
CAGAGAAACT GGTATGTAAA GCACCCTAGT TACCTTAAAC GTGTTGCTAA ACGTGCCGAG
CCTTTCCTCT ACTATATTGT TCAAGAGTTA GAAAAGAATG ATATGCCAAT TGAGCTGGCT
TTCTTACCTA TTGTAGAAAG TGCTTTTGAC CCCTTTGCTT ATTCGCATGG TCGCGCTTCA
GGCATGTGGC AGTTTGTGCC GGGTACAGGT GAACGTTTTG GTATGAAGCA GAACTGGTGG
TATGACGGCA GACGTGATGT CGTTGCTTCA ACCGAAGGTG CTATTAAATA CCTAAAATAT
TTGCACAAGT TTTTCGATGG CGATTGGATG CTCGCATTAG CGGCATATAA CTCTGGCGAA
GGTCGTGTTA GAAATGCCGT AAGAAAGAAC AAACGCCTAG GTAAACCGAC CGATTTTTGG
TCGCTTGATT TACCAAAAGA AACCCGTGCT TATGTACCAA AATTATTAGC CTTAGCTGAT
ATTGTAAAGC GCCCTGAAGA CTTTAATTTA TCACTTTATT CAATCGATAA TAAAAGTGTC
TTGAGCCAAG TAGATATTAA ATCACAGCTC GATTTAGCGA AGGCAGCAAC GTTAGCAGGC
TTATCGTTAG CTGAATTACA GCGTTTAAAT CCTGGTTTTA ATCGCTGGGC TACTGATCCT
GACGGCCCAC ACCGTTTATT GTTACCTTCG CACACCGTAG AAAAGTTTGA ACTAGGTCTG
AGTAAGCTGA GTAAGAAAGA TCGACTCGCT TGGCAACGTT ATAAAATTAA AAGCGGTGAT
AACCTAGGAC TTATTGCTAA TAAATTTAAT ACCCGCGTTG ATTTGATACA ACAAGTGAAT
AACATTAAAG GCAATCAGAT ACGTGCTGGA AAGCATTTGC TTATTCCTGT TGCGGCTAAA
TCATTAGATA GTTATGTTTT CTCACAAGAA CAACGTATTG CTAAAAAGCA AAATAGACCA
CAAAAGGGAC GAAAACTCGT TCACACCGTT AAATCTGGTG ATAATTTATG GGACATAGGA
CGTAAATATA AGGTAAATAG CAAAAGTATT GCTAAATGGA ATGGTTTTGC CCCAAGAGAC
ACGTTAAAAC TCGGTCAAAA GTTAGTGATT TGGCAAAAAA GTGATACTAA ATCAAATAAG
TCGAACTTTG CTAACAGTAA AACCGGTAAT AATGTCGAAA ACGCCATTAT GCGAAATATT
ACTTATAAAG TACGCCGTGG CGACTCTTTC GCTCGCATAG CCGATAAGTT TAATGTTCGA
ATTAGTGATA TTGAACGTTG GAATAATCTT GATAGAAAGA AATATTTACA GCCAGGTCAG
CGATTAAAGC TTTCTGTCGA TGTAACTAAT AATATTTAA
 
Protein sequence
MKYLLLPVVV LLAGCQSLSQ SDGNAITDNS DSQVETAHPV EINQALLADE SIDVIHPVAD 
VDFSLNNTLK DQKAIDENNI WPRIRSQLTF DIPNQKRLVS QRNWYVKHPS YLKRVAKRAE
PFLYYIVQEL EKNDMPIELA FLPIVESAFD PFAYSHGRAS GMWQFVPGTG ERFGMKQNWW
YDGRRDVVAS TEGAIKYLKY LHKFFDGDWM LALAAYNSGE GRVRNAVRKN KRLGKPTDFW
SLDLPKETRA YVPKLLALAD IVKRPEDFNL SLYSIDNKSV LSQVDIKSQL DLAKAATLAG
LSLAELQRLN PGFNRWATDP DGPHRLLLPS HTVEKFELGL SKLSKKDRLA WQRYKIKSGD
NLGLIANKFN TRVDLIQQVN NIKGNQIRAG KHLLIPVAAK SLDSYVFSQE QRIAKKQNRP
QKGRKLVHTV KSGDNLWDIG RKYKVNSKSI AKWNGFAPRD TLKLGQKLVI WQKSDTKSNK
SNFANSKTGN NVENAIMRNI TYKVRRGDSF ARIADKFNVR ISDIERWNNL DRKKYLQPGQ
RLKLSVDVTN NI