Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1998 |
Symbol | |
ID | 3519306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 2067244 |
End bp | 2068902 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637284460 |
Product | putative membrane-bound lytic murein transglycosylase |
Protein accession | YP_268728 |
Protein GI | 71279182 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTATT TATTATTACC CGTTGTAGTT CTTTTAGCCG GCTGTCAAAG CCTATCCCAA AGTGATGGTA ATGCCATTAC TGACAATTCA GATTCGCAAG TTGAAACTGC TCATCCAGTT GAGATTAATC AAGCGTTATT AGCAGATGAA AGCATTGACG TTATCCATCC TGTTGCTGAT GTTGACTTCT CTTTAAATAA TACCTTAAAA GATCAAAAAG CTATTGATGA GAATAATATT TGGCCACGCA TTCGTAGCCA ATTAACGTTT GATATTCCGA ATCAAAAACG TCTTGTCTCT CAGAGAAACT GGTATGTAAA GCACCCTAGT TACCTTAAAC GTGTTGCTAA ACGTGCCGAG CCTTTCCTCT ACTATATTGT TCAAGAGTTA GAAAAGAATG ATATGCCAAT TGAGCTGGCT TTCTTACCTA TTGTAGAAAG TGCTTTTGAC CCCTTTGCTT ATTCGCATGG TCGCGCTTCA GGCATGTGGC AGTTTGTGCC GGGTACAGGT GAACGTTTTG GTATGAAGCA GAACTGGTGG TATGACGGCA GACGTGATGT CGTTGCTTCA ACCGAAGGTG CTATTAAATA CCTAAAATAT TTGCACAAGT TTTTCGATGG CGATTGGATG CTCGCATTAG CGGCATATAA CTCTGGCGAA GGTCGTGTTA GAAATGCCGT AAGAAAGAAC AAACGCCTAG GTAAACCGAC CGATTTTTGG TCGCTTGATT TACCAAAAGA AACCCGTGCT TATGTACCAA AATTATTAGC CTTAGCTGAT ATTGTAAAGC GCCCTGAAGA CTTTAATTTA TCACTTTATT CAATCGATAA TAAAAGTGTC TTGAGCCAAG TAGATATTAA ATCACAGCTC GATTTAGCGA AGGCAGCAAC GTTAGCAGGC TTATCGTTAG CTGAATTACA GCGTTTAAAT CCTGGTTTTA ATCGCTGGGC TACTGATCCT GACGGCCCAC ACCGTTTATT GTTACCTTCG CACACCGTAG AAAAGTTTGA ACTAGGTCTG AGTAAGCTGA GTAAGAAAGA TCGACTCGCT TGGCAACGTT ATAAAATTAA AAGCGGTGAT AACCTAGGAC TTATTGCTAA TAAATTTAAT ACCCGCGTTG ATTTGATACA ACAAGTGAAT AACATTAAAG GCAATCAGAT ACGTGCTGGA AAGCATTTGC TTATTCCTGT TGCGGCTAAA TCATTAGATA GTTATGTTTT CTCACAAGAA CAACGTATTG CTAAAAAGCA AAATAGACCA CAAAAGGGAC GAAAACTCGT TCACACCGTT AAATCTGGTG ATAATTTATG GGACATAGGA CGTAAATATA AGGTAAATAG CAAAAGTATT GCTAAATGGA ATGGTTTTGC CCCAAGAGAC ACGTTAAAAC TCGGTCAAAA GTTAGTGATT TGGCAAAAAA GTGATACTAA ATCAAATAAG TCGAACTTTG CTAACAGTAA AACCGGTAAT AATGTCGAAA ACGCCATTAT GCGAAATATT ACTTATAAAG TACGCCGTGG CGACTCTTTC GCTCGCATAG CCGATAAGTT TAATGTTCGA ATTAGTGATA TTGAACGTTG GAATAATCTT GATAGAAAGA AATATTTACA GCCAGGTCAG CGATTAAAGC TTTCTGTCGA TGTAACTAAT AATATTTAA
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Protein sequence | MKYLLLPVVV LLAGCQSLSQ SDGNAITDNS DSQVETAHPV EINQALLADE SIDVIHPVAD VDFSLNNTLK DQKAIDENNI WPRIRSQLTF DIPNQKRLVS QRNWYVKHPS YLKRVAKRAE PFLYYIVQEL EKNDMPIELA FLPIVESAFD PFAYSHGRAS GMWQFVPGTG ERFGMKQNWW YDGRRDVVAS TEGAIKYLKY LHKFFDGDWM LALAAYNSGE GRVRNAVRKN KRLGKPTDFW SLDLPKETRA YVPKLLALAD IVKRPEDFNL SLYSIDNKSV LSQVDIKSQL DLAKAATLAG LSLAELQRLN PGFNRWATDP DGPHRLLLPS HTVEKFELGL SKLSKKDRLA WQRYKIKSGD NLGLIANKFN TRVDLIQQVN NIKGNQIRAG KHLLIPVAAK SLDSYVFSQE QRIAKKQNRP QKGRKLVHTV KSGDNLWDIG RKYKVNSKSI AKWNGFAPRD TLKLGQKLVI WQKSDTKSNK SNFANSKTGN NVENAIMRNI TYKVRRGDSF ARIADKFNVR ISDIERWNNL DRKKYLQPGQ RLKLSVDVTN NI
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