| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1962 |
|---|
| Symbol | |
|---|
| ID | 3519525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 2029677 |
|---|
| End bp | 2030858 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637284424 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_268692 |
|---|
| Protein GI | 71278003 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATT TAATGCTAAC CAATGTTGTA CCACCAAAAA TGGCACTGTT GAGAAATAAG
TCGAGCAATA AGTCGATTAA AGGAAACCTT TTCAGTTCAG CATTCATAAC TTTTACGTTT
ATCTCAGTCA TTGGTTTACT TAACTTTTGC CAAGAAGCCA ATGCGGCAGA AACGCCAGAA
AAGCCAGCAC ACTTGGTCAG TGTTGAGTCC GTTAAAAAAG AACAGGTGAA CCCAAGTATT
TGGTTGCCTG CCAATGTTAT CAGCCGTAAA AATGCACCAA TATCTGCGGA ACAAACCGGA
CAATTGTTGT GGATTGAAGA TGTTGGTAGC CAAGTTAAAA AAGGCCAGCT GTTAGCACAA
ATTGACGATC GCCATTTGAA GTTGCAATTG GCCGGTCAAC AAGCTCAAGT GAATCAACAT
CAAGCTGATG TTGACTATCT CACCGGGCAA AAGGCACGTT TTCTAAAGTT GCGCGAAAAA
AACAATTCAG CGTTAAGTGA ACTTGAACGG GTTAATAAAG ATTTAACCAT TGCTATTAAT
GAAGTTGCTG CGTTGAATAT ATCAGTGGAG CAAACCTTAC TTTCCTTAGA GAAAACCACT
ATTAGAGCGC CGTTTACTGG AAATATTAGT CAACGTTTTG CCCATGTTGG TGAGCTAATC
TCTGTTGGCC GTCCGTTAGT GCAACTCATT GATACTAAGA ATCTTGATAT TAAAATTGCT
GCGCCAATTT CAATCGCACC ATTTTTACAA CGAGGCAGTA AGGTGATGGT CAAATGGAAT
CAAACCTTGA TTGAACTACC TGTACGTACA TGGAGCCAAG CGGGCGATCA AGCTTCCCGT
ACTTTTGATG TCAGGCTAGC TGCTGATGGC ATAGCGATGT TAGCAGGTAC CGCTGTTACT
GTCTCTTTAC CTAAACAAGC ACCAAGAGAA GCTATTTTAG TGCCACGTGA TGCTTTGATG
CTGCGAGAAA ATGAAACTTA TGTATTAACT ATCGATGCTG ATCAACAAGC ACAGAAAGTT
GCTGTGCTTG TTGGACAAGG TGTAAAGAGT TGGGTTTCAG TAACGGGCGC TTTATCGGTA
AATGATAGTG TGGTCGTTCG TGGCGGAGAG CGTTTACAAA GCGGTGAGAA AGTACGATTT
ATGAAAGATA AAAATCATGA GGTCATTGCT AAAGTTAATT AA
|
|---|
| Protein sequence | MNNLMLTNVV PPKMALLRNK SSNKSIKGNL FSSAFITFTF ISVIGLLNFC QEANAAETPE
KPAHLVSVES VKKEQVNPSI WLPANVISRK NAPISAEQTG QLLWIEDVGS QVKKGQLLAQ
IDDRHLKLQL AGQQAQVNQH QADVDYLTGQ KARFLKLREK NNSALSELER VNKDLTIAIN
EVAALNISVE QTLLSLEKTT IRAPFTGNIS QRFAHVGELI SVGRPLVQLI DTKNLDIKIA
APISIAPFLQ RGSKVMVKWN QTLIELPVRT WSQAGDQASR TFDVRLAADG IAMLAGTAVT
VSLPKQAPRE AILVPRDALM LRENETYVLT IDADQQAQKV AVLVGQGVKS WVSVTGALSV
NDSVVVRGGE RLQSGEKVRF MKDKNHEVIA KVN
|
|---|
| |