Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1926 |
Symbol | |
ID | 3520256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 1982226 |
End bp | 1984565 |
Gene Length | 2340 bp |
Protein Length | 779 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637284388 |
Product | TonB-dependent receptor |
Protein accession | YP_268656 |
Protein GI | 71279795 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGCG TCTCAGCCTG TCTAAGCTTT TTTATTATCT TGCCCGTATT AGGACAAGAT ATAAATGATA TGGAAAAAAT TAATGTTTAT GGTCAAACGC CACTGTCGAG TACTGTCGTC AGTGATCACA GTGCTTTTGG CAGTGTTCAA ACGATAGATG CGCAAGCGCT TGTTCAATCG CAAGCTATCT CTTTAGCCGA ACATATGAAG AATCAGCTGA CGAGTTTGCA TATAAATGAC GTGCAAAATA ATCCATTTCA GCCTGATGTT CAATACAGAG GGTTTACCGC TTCACCGCTA TTAGGCTTAC CTCAGGGCAT CTCTGTTTAT TTAAATGGCG TACGATTTAA TGAACCCTTT GGTGATACCG TAAATTGGGA TTTAATACCT CTTGCGGCGC TTGACACTGT TTCTTTATAT TCTGGTTCAA ACCCTGCTTT TGGCCAAAAC ACCTTAGGCG GTGCGCTCGC GTTACAGACA AAAAATGGCT TTAGCTATAC ACAAAATGAG CTTGAGGCTC GTTTTGGTAG CTTTGGACAA CAACAATATA CGGTGCAATC TGGCGGTAAT AAGGGCAATT GGGGTTATTA TTTTGTTGCC AACAAGTATC AAGAGGATGG TTGGCGAGAT CATTCTGCAA GTGAATTACA ACAGATGCTT GCAACCCTTA CTTATGCGAG TGAACGTCGT ACCATCGATT TTATTGTTTC TGCCAATAAT AACGAAATGC TTGGTAATGG CGCAGTGCCA GAAAAACTTG CTGGATTAGC GGGTAGAAGC GCTATTTATA CCCAGCCAGA TAAAACCGAC ACGAGTTTTC AACAGTTCAT TGTTAAGGCC GACAATGTTA TTAACGATCA AATGTCATGG CAGGCAAATG TTTATTATCG CCAAAACGAA ATTAACAGCT TAAATGGTGA TGACAGTGAT TATGAAGAGT GTGAGTCTGG CTCGCTTTAT AGCTTGTGTG AAGAGGGGGA AGATGACTCT TTAGAGCGAG TTCATTTTGT TGGTTATGAT GAAGATACTT GGTTAAGCGA ACTAAGTGAT ATTGATGCAG ACGATATAGA TGGTACTTTG AATACAGGTT TAACGGATAA TGAAAGTTAT GGTGCTGCGC TGCAATGGGT TGGATTAAGT CATTTTGATG CTTCTGAATC TTTCTACGCT GTTGATAATG AATTTATTTT TGGCTTGGGT GTAGATCAAG CTCAAATTAG TTTCAACAGC GATACCCAAT TTGGCATACT TAATAATGAA ACAGTAGATG ATGACCGTTC GGTAACCGGT ATTGGTTTGT ATGATAGTGA ATCACGTGTA AGTTTAAAGG TGAAAACTCA ACAGCAATAT CTTTACTTTT TAAATGCGAT GACATTCGGG GGGAATTTTA CCCTTAACCT CGCTGGTCGT TACAATTACG CCGATGTGAG CATGAAGGAT CAAATTGAGA CTGGCAAAGG CTCACTAAAC GGTGAGCATG TTTTTCATCG TTTTAATCCG GCAATTTCTG TTAACTATCA GCTTAATCAA GAGTACTCGG TTAAATTAAG TTACAGTGAA TCTTCACGTA CACCTAGCCC TGCTGAATTG AGTTGTGCGG ATGAAGAAGA CCCGTGTAAA TTACCCAATG CTTTTGTTGC CGATCCGCCT CTTGAGCAAG TTGTTGCCAA AACAACAGAA GCGTCTTTAC ATTACGATAA TACCAATTTT TCAGCGCTAG CCACGGTTTT TTCAACCTTG AGTTATCAAG ATATTATCTT CCAACAGGCG GGTGAAAAGT CTAATGAAGG TTACTTTATC AACCTTGATA AAACTCAGCG CCAAGGAGTA GAGCTTGCGT TTTCCACCCA AGTTGGCGAT GTTGATTTTA GTGCTAGTTA TAACTATTTA AAAGCAACGT TTGAATCTCC CTTTGTCTCT TTTAGTCCTG TTAATCCTTT AGGACCGAAC AGACAAGTTA ATCCAGGTGA TGAAATACCA GGACAACCTC AAAACCAGTT TAAATTCCAT ATAAATTGGC TGTTCAACGA CCAGATAAAT GTCGGCACAG AATTTTTATA TGCCTCTTCA TCCTATTATC GAGGTGATGA AGCAAACGAT AATAAGAAAA TACCGGGTTA TGCAGTAACC AATATTTATC TGAATTATCA AATCAATGAG CGACTACGTT TATCTGCGAA AGTGGATAAT TTATTTGACC GTCATTTTGA TACGTTTGGA ACCTATGGCG AAGCCGATGA AGTGCTAGGC GAACTATACC CAGATACGGA ATTTGATGAA TACTTTGTCG GACCATCAAG ACCACGTGCT ATCAGCGTCA GTATTAACTA TCAGTTCTAA
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Protein sequence | MKSVSACLSF FIILPVLGQD INDMEKINVY GQTPLSSTVV SDHSAFGSVQ TIDAQALVQS QAISLAEHMK NQLTSLHIND VQNNPFQPDV QYRGFTASPL LGLPQGISVY LNGVRFNEPF GDTVNWDLIP LAALDTVSLY SGSNPAFGQN TLGGALALQT KNGFSYTQNE LEARFGSFGQ QQYTVQSGGN KGNWGYYFVA NKYQEDGWRD HSASELQQML ATLTYASERR TIDFIVSANN NEMLGNGAVP EKLAGLAGRS AIYTQPDKTD TSFQQFIVKA DNVINDQMSW QANVYYRQNE INSLNGDDSD YEECESGSLY SLCEEGEDDS LERVHFVGYD EDTWLSELSD IDADDIDGTL NTGLTDNESY GAALQWVGLS HFDASESFYA VDNEFIFGLG VDQAQISFNS DTQFGILNNE TVDDDRSVTG IGLYDSESRV SLKVKTQQQY LYFLNAMTFG GNFTLNLAGR YNYADVSMKD QIETGKGSLN GEHVFHRFNP AISVNYQLNQ EYSVKLSYSE SSRTPSPAEL SCADEEDPCK LPNAFVADPP LEQVVAKTTE ASLHYDNTNF SALATVFSTL SYQDIIFQQA GEKSNEGYFI NLDKTQRQGV ELAFSTQVGD VDFSASYNYL KATFESPFVS FSPVNPLGPN RQVNPGDEIP GQPQNQFKFH INWLFNDQIN VGTEFLYASS SYYRGDEAND NKKIPGYAVT NIYLNYQINE RLRLSAKVDN LFDRHFDTFG TYGEADEVLG ELYPDTEFDE YFVGPSRPRA ISVSINYQF
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