Gene CPS_1813 details

Gene Information

• Locus tag: CPS_1813
• ID: 3519676
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 1863853
• End bp: 1864548
• Gene Length: 696 bp
• Protein Length: 231 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637284275
• Product: ABC transporter, ATP-binding protein
• Protein accession: YP_268543
• Protein GI: 71278114
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.519348
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTCAACAC TTGCTATCAA CTTACAAAAT ATACACCACT ATTATAAAGA TACCCCTGCC 
AGTTATGCTG GGTTATCTAT TGCTCAATGG CAAGTCGATA TCACTGAACG TGTATTCTTA 
CATGGAAGTT CTGGTTCCGG GAAAACCACG CTTTTAAATT TATTGTGTGG AATTTTACTA 
CCAACGTCAG GCAGCGTTAG TCTATTCGAT CATAATATCA GTGCGTTATC AAACAGCCAG 
CGGGACTTAT TTAGAGCAAA AAATATTGGC GTGGTATCTC AAAAATTTAA TCTTATCCCG 
TATCTATCGG TGCTTAAAAA CATTCAGCTC GCAGCCTACT TCGCCAAAAA TTCAAGGCCT 
GATGTGAATT CTGACGTGCA AACATTGCTT AACGCATTGC AGTTACCCAG TAATATTATG 
CACAGACAAG TTAACCAATT GAGTGTTGGA CAGCAGCAAC GCGTCGCAAT TGCCCGCGCT 
CTGATTAATC ATCCACGATT ATTATTAGTT GATGAACCTA CCTCGGCACT CGATGCATCG 
GCAAAAAATG CATTTATGGA CTTACTTATG CAGATCTGTG ACAACACTAA AATCACGCTT 
ATTTTTGTCA GTCATGATGC CTCCTTGTTG CATCATTTTG ATAGTAACCT CGACATTACT 
ACATTGAGTA AAACTGAGGA AACCATGTCA TTATGA 

 

Protein sequence

MSTLAINLQN IHHYYKDTPA SYAGLSIAQW QVDITERVFL HGSSGSGKTT LLNLLCGILL 
PTSGSVSLFD HNISALSNSQ RDLFRAKNIG VVSQKFNLIP YLSVLKNIQL AAYFAKNSRP 
DVNSDVQTLL NALQLPSNIM HRQVNQLSVG QQQRVAIARA LINHPRLLLV DEPTSALDAS 
AKNAFMDLLM QICDNTKITL IFVSHDASLL HHFDSNLDIT TLSKTEETMS L