Gene CPS_1790 details

Gene Information

• Locus tag: CPS_1790
• ID: 3520722
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 1833310
• End bp: 1833984
• Gene Length: 675 bp
• Protein Length: 224 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 637284253
• Product: hypothetical protein
• Protein accession: YP_268521
• Protein GI: 71280258
• TIGRFAM ID: [TIGR02595] PEP-CTERM putative exosortase interaction domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.844563
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTAAGA AAACTTTAAC TGCAATTGGA TTTTTAATCC TGTCATTTAC TGCTTCTGCT 
GGTTTAATTG ACACTACTAA TGATAGCTTC ATTGATCAAA CTACTGGCCT AGAATGGATG 
GATTTTGGTG TTAATAACAA AGATACCTAT GACTATGTGG CATCGCAACT AGATACTCGT 
GATGAATATG AAGGATGGCG ATTAGCTACC AAAGATGACG TATATTCTCT GTATTCAAAC 
ACATTTTTAA CTTTAACTGC TGATTATATC TCACATCTTG ATAGTTATGG TCGCTCAACC 
GTTGGAGATG GGAAAAATAA GTCAGTGTCA GTTTTAGATA ACCTATTCGA AAAAATGGGT 
TACAACCAAG TAGATAATCA AGGGAATGCA TTTGAAATAA AATACGCTAC AGGACTTTTT 
CAAGGTGATG ATGGCTTATC CTTGTTTAAA ACTTATGATT TGGTGGGGAG TTTCCGAAAA 
AGTAGAAGCC ATGATCAAGT GGACTTTTAC GATCATATGA GTTTTGATTA TCTCAGTAAT 
AATACTAGTT TAGTGTATTC AACCATGCTG GTGAAAAATA AAAGTTTAGC TACTGTGCCT 
GAACCTTCAA CCTTAACTAT TTTCGCTTTA GGCATGTTCG GATTAGCCGC TCGTAAATTT 
AAGAAAAAAA ACTAA 

 

Protein sequence

MFKKTLTAIG FLILSFTASA GLIDTTNDSF IDQTTGLEWM DFGVNNKDTY DYVASQLDTR 
DEYEGWRLAT KDDVYSLYSN TFLTLTADYI SHLDSYGRST VGDGKNKSVS VLDNLFEKMG 
YNQVDNQGNA FEIKYATGLF QGDDGLSLFK TYDLVGSFRK SRSHDQVDFY DHMSFDYLSN 
NTSLVYSTML VKNKSLATVP EPSTLTIFAL GMFGLAARKF KKKN