| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1537 |
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| Symbol | |
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| ID | 3520698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1578223 |
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| End bp | 1581336 |
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| Gene Length | 3114 bp |
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| Protein Length | 1037 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637284000 |
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| Product | hydrophobe/amphiphile efflux-1 family protein |
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| Protein accession | YP_268279 |
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| Protein GI | 71280234 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.209864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAGTA AAACTTTTAT CAATCGGCCT AAATTTGCGT TTGTAATATC TATCGTTATT
ACACTTGCTG GTTTAATTGC CATGAGTGTA CTTCCCGTAA ACATGTACCC GGAAATAACA
CCGCCCCAGG TTCAAATCTC AGCTGTCTAT CCCGGAGCAA GTGCGCAAAT TGTAGAAGAA
TCAGTCATTA GGCCTATTGA AGAACAAATC AATGGTGTTG AAGATATGAT GTATATTGAA
TCTTCAGCTT CCAATAATGG TAGTGCTGTA ATCACGGTAT TTTTTAAAGT GGGTACCGAT
GGCGATATTG CGCAGGTTAA TGTGCAAAAC AGAGTCGCAC TGGCAACGAG TTCATTACCC
TCAGAGGTAA CACGCCAAGG GGTTGATGTT AAGAAAAAAT CCAGTTCGAT GTTATTAGGT
ATTAATCTAT TTTCTGAACA AGAAGGTATC AATCAGCTTT TCTTAAGTAA CTATGCGACT
AATTATCTAA CTGAGCCGTT AGGACGCATT AAGGGTGTTG CTTCTGCAGA AGTGATGGGT
GAAATGACTT ATAGCATGCG CGCATGGCTA AACCCAGAAC GTATGTCATC ACTCAGTATT
ACCGTTACTG AAGTGCAACA AGCACTTCAA GAGCAAAATA TGATTGTAGC TGCAGGTAAG
TTAGGTGCTA GCCCCACGTT ACCAAATCAG CAGTTTGAGT ATTCTATCCA AGCAAAGGGT
CGTTTACAAA CACCTGAGGA ATTTGGTCAA ACGATAATAC GAGCTCAGCG CAATGGTAAT
TTTATTCGTT TAAATGACAT TGCTCGTTTA GAACTTGGCG CTGAAGACTA TTCAACACAA
GCAAGACTAA ATGGTAAAGA AACAGCTTTC CTTGTTATTT ATCAATTACC TGATGCTAAC
GCCACAGAGG TTGCTTCTTT AGTCAAAGCT GAAATGGCAG AACTCTCTCA ACGTTTTCCA
GACGGTCTAA AATATGTCAT TCCTTACGAT ACCACTAAAT TTATTGACCG CTCAATTGAA
GAGGTTGTGG TTACTTTATT TCAAGCAATC GTCTTAGTTA TCTTAGTTGT CTTTTTATTC
CTACAAAATT GGCGCGCGAC TATTATTCCC ACCCTTGCAA TACCAGTATC TCTTATTGGC
ACCTTTGCTT TTATGGTTTT GATGGGATAT TCAATTAACA CGGTTACGTT ATTTGGTTTA
GTGCTCGCCA TTGGTATCGT TGTTGATGAT GCCATTATCG TTATTGAAAA TGTTGAACGC
ATATTAAAAG AAGAACAACT TCCCATTAAA GAAGCGGTAA CTAAAGCAAT GGACCAAGTT
TCTGGTCCTA TCATTGCGAC TACCTTGGTT TTACTGGCTG TATTTGTGCC TGTTGCCTTT
ATGCCAGGTA TAACGGGGGA GTTATACAAG CAATTCTCTG TGACTATTTC TTTCGCAGTA
CTGATTTCTT CATTAAATGC ACTAACATTG AGCCCTGCGT TATGTACTGT GCTTTTAAGC
GCAGAAAAAA TGAAACCAAT CACTTGGTTA CTGCCATTTG AGCGCCTTAT CACTAAGGCA
ACAGGAGGTT ATACCAAGAC TGTTGGCTTT ATGCTCAAGC GACTTACTCG AGTTGGACTT
TTTGTCGGTT TAATTTTCAT TGGAGCAGGT TGGTTAACTA CCGCCGTTCC AACGGCATTT
TTACCTGCGG AAGATCAAGG TTATCTTTTT GTGGATATTC AGTTACCAGA TGCCGCGTCA
AGTAATCGGA CTCAAGCCGT ATTAGACAAA ATAACACCCA CTATTTTAAA TGATGCTGCC
GTTGAGGATA TCATCACCGT ATCAGGCTTC TCATTACTTG GTGGTGCCGG TTCGAATAAT
GGTCTTGCCA TAATTCTTCT TAAAGATTGG GAAGAACGTA CTACACCAGA ACTTGGATTG
AAGCAGATAA TTCCTCGTCT GATGGGGCAA TTATGGACTA TGCCAGATGC TCAAATTATG
GTATTTAATC CGCCACCTAT TCCCGGTTTA GGTAATAGCT CAGGTTTTGA TTTTAAATTA
CAAGACAGTG AAGGGCGAGA TCCTGCCGAA TTAGCACAAG TAATGAATGG CCTTATTTAT
GAAGCCAATC AGCGACCTGA ATTATCACGT GTGTTTAGTA CTTATCGCGC CAATGTACCG
CAGTACTTTT TAGAAGTAGA TCGCAACAAA GCGAAAGCAC AAGGTGTCGC TTTGTCTGAT
ATTTTTGCGA CTTTACAAGC ACAGTTAGGC TCTTTATATA TTAATGACTT TAGTCAGTTT
GGTCGTACTT ACCGTGTGAC AATTCAGGCA GAAAGTCAGT ATAGAGCTGA ACCTTCAGAT
CTTCGATATT ACTTCGTTCG AAATAAAGAC GACGAGATGG TACCGCTAAC TACTCTAGCA
AGTGTTAAGC CTATCTTAGG GCCTACAACT ATTAGTCACT TTAACTTATA CCGTAGTGCT
AGCATCACAG GTAATGCTTC TCCAGGATAT TCCTCAGGGC AATCTATTGA TGTGATGGAA
GAATTAGCTA GTACATTACC TCAAGGGTAT ATTTATGAGT GGTCAGGGCA GTCGAAACAA
GAATTAGAAG CGGGTAATCT AGCACCCATA TTATTTGGTC TTGCTATTAT CTTTGTTTAC
CTATTTTTAG TGGCACAGTA TGAAAGCTGG ACTATTCCGT TCTCAGTTAT TGCCGCAGTA
CCTTTAGCCT TGTTTGGTGC TATGTTGGCG CTTTATACAG TAGGCATGGC TAATAATATT
TATGCACAAG TTGGTTTGGT CTTATTAATA GGTCTTTCGA CTAAAACTGC CATTTTGATT
GTTGAATTTG CCATGGAACA AAGAGCGGCT GGTGAAACGA TAATGAATGC GGCACTTAAT
GCCGCTAAAA TGCGTTTTCG TGCGGTATTG ATGACAGCCT TCTCGTTTAT ATTAGGTGTT
CTACCACTAG TTTTTGCAAC GGGTGCAGGA GCTGGAAGCC GAGTTTCTTT AGGTATCACG
GTATTGGCTG GTATGATTGC AGCCACACTA TTTGGTACTT TACTTGTACC TTACTTCTAC
CTATTGATTC AACGTATGCG AGAAAAAATT AAAGGTAAAC CAGATGTGAC CTAG
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| Protein sequence | MISKTFINRP KFAFVISIVI TLAGLIAMSV LPVNMYPEIT PPQVQISAVY PGASAQIVEE
SVIRPIEEQI NGVEDMMYIE SSASNNGSAV ITVFFKVGTD GDIAQVNVQN RVALATSSLP
SEVTRQGVDV KKKSSSMLLG INLFSEQEGI NQLFLSNYAT NYLTEPLGRI KGVASAEVMG
EMTYSMRAWL NPERMSSLSI TVTEVQQALQ EQNMIVAAGK LGASPTLPNQ QFEYSIQAKG
RLQTPEEFGQ TIIRAQRNGN FIRLNDIARL ELGAEDYSTQ ARLNGKETAF LVIYQLPDAN
ATEVASLVKA EMAELSQRFP DGLKYVIPYD TTKFIDRSIE EVVVTLFQAI VLVILVVFLF
LQNWRATIIP TLAIPVSLIG TFAFMVLMGY SINTVTLFGL VLAIGIVVDD AIIVIENVER
ILKEEQLPIK EAVTKAMDQV SGPIIATTLV LLAVFVPVAF MPGITGELYK QFSVTISFAV
LISSLNALTL SPALCTVLLS AEKMKPITWL LPFERLITKA TGGYTKTVGF MLKRLTRVGL
FVGLIFIGAG WLTTAVPTAF LPAEDQGYLF VDIQLPDAAS SNRTQAVLDK ITPTILNDAA
VEDIITVSGF SLLGGAGSNN GLAIILLKDW EERTTPELGL KQIIPRLMGQ LWTMPDAQIM
VFNPPPIPGL GNSSGFDFKL QDSEGRDPAE LAQVMNGLIY EANQRPELSR VFSTYRANVP
QYFLEVDRNK AKAQGVALSD IFATLQAQLG SLYINDFSQF GRTYRVTIQA ESQYRAEPSD
LRYYFVRNKD DEMVPLTTLA SVKPILGPTT ISHFNLYRSA SITGNASPGY SSGQSIDVME
ELASTLPQGY IYEWSGQSKQ ELEAGNLAPI LFGLAIIFVY LFLVAQYESW TIPFSVIAAV
PLALFGAMLA LYTVGMANNI YAQVGLVLLI GLSTKTAILI VEFAMEQRAA GETIMNAALN
AAKMRFRAVL MTAFSFILGV LPLVFATGAG AGSRVSLGIT VLAGMIAATL FGTLLVPYFY
LLIQRMREKI KGKPDVT
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