| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1449 |
|---|
| Symbol | |
|---|
| ID | 3522047 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1490606 |
|---|
| End bp | 1491520 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637283912 |
|---|
| Product | dihydrodipicolinate synthetase family protein |
|---|
| Protein accession | YP_268191 |
|---|
| Protein GI | 71281575 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.365355 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTAA ACTGGCAAGG TGTTTACCCA GCAGTAACAA CGCAATACAA CGAAGATTTA
TCTATTAACT TTGAAGCAAC TACTCAAATG GTTGATACCA TTATCAAAGA AGGTGTTAAT
GGCATCATTG CTTTAGGAAC TGTTGGTGAA AATGCTTCAC ATACCCGTGA AGAAAAAGTC
GCTATTTTAA AAGCGGTAAA AGAAGTTGTT GCGGGTCGTG TGCCGGTACT TTCTGGTGTT
GCTGAAACAT CGACTCAGTT TGCGATTGAA TTCTCACAAG CCTGCGAAGC AATAGGTATT
GATGGCTTAA TGGTTTTACC AGGCATGATT TACAAATCTG ATGAAAGCGA AGCGGTAAAT
CATTATCAGC AAATTGCGCG TAATTGTGGT TTACCTATTA TGATTTACAA CAACCCTGTT
ACTTATGGTG TTGATGTTGG CATTGAAGGC ATGAAAATCT TGGCACAAGA AGACAACATA
GTATCAATTA AAGAAGCAAC TGAAGATACG CGTCGTATCT CTGAGTTGTA CTCCGCATTT
GATGATCGTT TTGTTATCTT TGGCGGTGTA GATGATATTG CCCTTGAATC TTTAATGCTG
GGTTGTACTG GCTGGATTTC AGGCTTAACA AATGTTTTCC CAAAAGAGTC CGTTGCTATC
TATAAATTAG CAGAGCAAGG ACGTTATGCC GAAGCCCTTG AAATTTGGCG CTGGTTCTTA
CCTTTATTAC GCTTAGATAC CGTACCTAAA CTTGTTCAGT GCATTAAATT ATGTGAACAA
CTTGCTGGTC GTGGTAGCGA ATTAACACGT GCCCCACGTA TGCCTTTAGT TGGTGATGAG
CGAGCAAACG TTGAACGTAT CTATAATGAA GCGGTTGCTA ATCGTATCGA TTTAAGCAAA
TTCAACTTAG ATTAA
|
|---|
| Protein sequence | MNVNWQGVYP AVTTQYNEDL SINFEATTQM VDTIIKEGVN GIIALGTVGE NASHTREEKV
AILKAVKEVV AGRVPVLSGV AETSTQFAIE FSQACEAIGI DGLMVLPGMI YKSDESEAVN
HYQQIARNCG LPIMIYNNPV TYGVDVGIEG MKILAQEDNI VSIKEATEDT RRISELYSAF
DDRFVIFGGV DDIALESLML GCTGWISGLT NVFPKESVAI YKLAEQGRYA EALEIWRWFL
PLLRLDTVPK LVQCIKLCEQ LAGRGSELTR APRMPLVGDE RANVERIYNE AVANRIDLSK
FNLD
|
|---|
| |