| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1435 |
|---|
| Symbol | |
|---|
| ID | 3520971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1473054 |
|---|
| End bp | 1473686 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637283899 |
|---|
| Product | amino acid transporter LysE |
|---|
| Protein accession | YP_268178 |
|---|
| Protein GI | 71280505 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | [TIGR00949] The Resistance to Homoserine/Threonine (RhtB) Family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.410501 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTGT TAATAAATAC TTATATGGCA GAAATTATAG CGGTGAGCAC AATTGCTATT
TTTATGGCTA TGTTACCCGG CGCTGATTTT GTGATGGTGA CACGTACGAG CATCTACAAT
GGCCGTTTTG CAGGTTTATA TATGAGCTTA GGTATGTGTT TATCTGTTTG TATTCACGCC
AGCTATTCTA TTGCTGGATT AGCAGTAGTG ATAGCAAATT CGCCATGGTT ATTTTCAGCA
ATCAAATATT TAGGTGCGGC TTATCTTATT TATATTGCTT GGCAGTTATT AACAACACGT
GAGAGTTTAA ATAAAGACCA AAGCAGTTCA ACGACTCAAA TGTCACCTTT TATGGCATTA
CGTTTAGGCT TTACTTGCAA TATATTAAAC CCCAAAACAT CTATTTTCTT CTTAAGTATT
TTTACGCAAG TGGTGTCGAT AGATACCCCG ATAATAATGC AAATAAGTTA TGGCTTGATC
ATAGTGTTGG CACATTTTAT TTGGTACAGC GGTGTGGCTT TATTGTTATC ACACCCAAGC
ATATTGCCTC GTTTCAATCG ACAAAAACAA AAAGTTGATA AAGTAGCAGG ATTTGTATTG
ATGCTAATTG CTATAAAGCT CAGCTTAGTT TAA
|
|---|
| Protein sequence | MELLINTYMA EIIAVSTIAI FMAMLPGADF VMVTRTSIYN GRFAGLYMSL GMCLSVCIHA
SYSIAGLAVV IANSPWLFSA IKYLGAAYLI YIAWQLLTTR ESLNKDQSSS TTQMSPFMAL
RLGFTCNILN PKTSIFFLSI FTQVVSIDTP IIMQISYGLI IVLAHFIWYS GVALLLSHPS
ILPRFNRQKQ KVDKVAGFVL MLIAIKLSLV
|
|---|
| |