| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1371 |
|---|
| Symbol | |
|---|
| ID | 3518452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 1411457 |
|---|
| End bp | 1412848 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637283835 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_268114 |
|---|
| Protein GI | 71279012 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATC TTACCCAAGG CTCAATTCCT AAACATCTGA TCTCGATGGC ATTACCCATG
ATGATAGGTA TGCTTATTCA AACATTGTAT TTTATTGTTG ATTTGTATTT TGTGGGTAAA
TTAGGCTCTG CAGCGCTCGC GGGATTGAGC TTAGCCGGTA ATGCGATGTT TTTAATCTTC
GCGCTGACAC AAATACTCAA TGTGAGCACT GCAGCGCTTA TCTCTCATGC GGTAGGCGCA
AAAGATCAAC AAGACGCAAA CCTTACCTTC AATCAATCAA TGATGTTATC TACTGTCGTT
GGCATCATTG TTTGTATCAT TGGTTATTTT GGTGCACAAG ATTACCTTAA TTTAATATCA
CAAGACTCAG AAACCGTGAT GATGGGCTTA ACTTACTTAC ATTGGTTCAT TCCCTGTATG
GCGCTGCAGT TTATTATGGT CTCTATCAGC TCTGCGCTTC GAGGAACAGG TATTGTTAAA
CCAACTATGG TGATTCAGAC GCTATCTATT TTACTCAATA TCATACTCTC ACCCATATTG
ATTACTGGTT GGGGTTCAGG CTACGCCATG GGTATCGCTG GCGCTGGATT TGCCAGCTCA
CTGTCAGTAA TTTTTGCTGT GGTACTTTTA TGTTATTACT TTATAACAAC AGATAAGTAC
GTCAGCGTTG ATTTCTCTCT TTGGCATATT AACGTGCCTC GCATTAAGAA ATTGCTAGCT
ATTGGTTTAC CCGCCGGTGG GGAGTTCTTT TTGATGTTTG TTTATATGGG CGCTATTTAT
TGGCTAATTA AACCGTTTGG TGCGGAAGCT CAAGCAGCAT TTGGTCTTGG TTCACGTGTC
ATGCAAGCAT TATTCTTACC TGCAATGGCT ATTGCTTTTG CAGCGCCTGC GATTGCAGGG
CAAAACTTTG GCGCACAAAA TTACCAAAGG GTGAGAGATA CTTTTAGATG GACTGCCATT
ATGACCTGCT CGTTAATGGC TATTATCTTG TTAATTTGTT TAAGCCAAGC AGAATGGATG
CTGACTCACT TTTCTGACGA TCGAGAAGTG ATTTTGATTA GTGTGGCTTT TTTACAAATG
ATTTGTTGGA ACTTTGTTCC TGCCGGTTTA GTTTTTACTT GCTCGGGTAT GTTTCAAGCT
CTGGGAAACA CCATGCCTGC TTTACTGAGT ACCGCAACCC GCTTAATTAC TTTTATCTTG
CCTGCCCTTT GGTTATCCAA ACAAAGTGAC TTTCAGATAG AGCAGCTTTG GTATGTTTCT
GTCGCTACCG TTTGTTTGCA ATCATCGGTG AGTTTTTACT TTCTAAAACG AGAGTTTAAA
AAACGTTTAC CTAATGATAA TTTATCAAAC GAATGTTCTG ATGAACTTAA TAAAAATAAA
CTTATCACTT AA
|
|---|
| Protein sequence | MKDLTQGSIP KHLISMALPM MIGMLIQTLY FIVDLYFVGK LGSAALAGLS LAGNAMFLIF
ALTQILNVST AALISHAVGA KDQQDANLTF NQSMMLSTVV GIIVCIIGYF GAQDYLNLIS
QDSETVMMGL TYLHWFIPCM ALQFIMVSIS SALRGTGIVK PTMVIQTLSI LLNIILSPIL
ITGWGSGYAM GIAGAGFASS LSVIFAVVLL CYYFITTDKY VSVDFSLWHI NVPRIKKLLA
IGLPAGGEFF LMFVYMGAIY WLIKPFGAEA QAAFGLGSRV MQALFLPAMA IAFAAPAIAG
QNFGAQNYQR VRDTFRWTAI MTCSLMAIIL LICLSQAEWM LTHFSDDREV ILISVAFLQM
ICWNFVPAGL VFTCSGMFQA LGNTMPALLS TATRLITFIL PALWLSKQSD FQIEQLWYVS
VATVCLQSSV SFYFLKREFK KRLPNDNLSN ECSDELNKNK LIT
|
|---|
| |