| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1234 |
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| Symbol | |
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| ID | 3520153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 1267037 |
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| End bp | 1268116 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637283698 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_267977 |
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| Protein GI | 71279693 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.580475 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTACAC CTCAAGTTCA AAAAGAGAAT ACAGCTAAAA AAATTATTAT TCCTTTATTA
GCACTTATTA TATTACTCGT CATGGTGGCT TGGTTAGCAG GGGCTTTTAA CAAAAAAGTA
TCCCCTGGTT TTGAGGCCCC TTCCCCTACA TTAGTTAATT CAATTAGTTA TGTTGTAAAA
AGCAGCACAG AGGCAATATT TGAAGGTGTT GCTGCCAGTA TTACCGCAAA GCAAACAACG
ATTATCTCTT CAAGACTGCT GGCACGTATC GATAAAATTA ACGTACGAGC AGGTGATATT
GTTAAACGAG GCGACGTATT AATCACCTTA GAAAATAACG ATCTATCATC CAGAGTTATT
GAAGCCCAAG AACAAGTTAA TGCCATGATT GCAAGATACA CAGAGGCACA TCAAAATTTT
CAACGGGCTA AGGAGTTATT TAATAAAAAA ATTGCTTCTC AGTTTGATTT AGATAAGAGC
AAGGCTGACT ATCAAAGCAT TAAGGCGGAG CTTACCGCTG CCAAACAAAG CTTAGCTCAA
GCGCAAACAA CATTAAGCTA TGCAACACTG CGCGCGCCAA TTAATGGCAA GGTTGTTGAT
CGTTTTGCTG AGCCGGGTAA TACAGCGCAA GCGGGCGAGA AATTATTATC ACTATACAAT
CCTCTTTCTT TACGTGTTGA AGCTCAAGTG CGTGAACAAC TTGCACTTAC CCTCACTCAA
GGACAAAGTA TCAAGGTTGA ATTACCAACG ATAAAGCAAA ATATAGTAGG TCTAGTCGAA
GAAATAGTAC CTGCAGCAAA TACTGGATCT CGTAGTTTTT TAATAAAAGT AAGCTTACCC
TACCAAGAAA ACTTATTACC TGGCATGTAT GCTCGCTTAT TAATTCCTGC CGGTCAGGCA
CAAAAGCTTT ATCTACCAAA AAATAGTGTA TTTCATGTGG GTCAACTCAA CTTTGTTCAT
GTGCTTATTG ATGGGCAAAG TCAAAAGCGT TTTGTACGAA TAGACACAAA GGTTAAACCA
GGCTTTATTT CAATTATCTC GGGTCTTGTT GATGGAGATA TCATCGTTAC TACCGATTAA
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| Protein sequence | MSTPQVQKEN TAKKIIIPLL ALIILLVMVA WLAGAFNKKV SPGFEAPSPT LVNSISYVVK
SSTEAIFEGV AASITAKQTT IISSRLLARI DKINVRAGDI VKRGDVLITL ENNDLSSRVI
EAQEQVNAMI ARYTEAHQNF QRAKELFNKK IASQFDLDKS KADYQSIKAE LTAAKQSLAQ
AQTTLSYATL RAPINGKVVD RFAEPGNTAQ AGEKLLSLYN PLSLRVEAQV REQLALTLTQ
GQSIKVELPT IKQNIVGLVE EIVPAANTGS RSFLIKVSLP YQENLLPGMY ARLLIPAGQA
QKLYLPKNSV FHVGQLNFVH VLIDGQSQKR FVRIDTKVKP GFISIISGLV DGDIIVTTD
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