| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0838 |
|---|
| Symbol | |
|---|
| ID | 3521792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 851096 |
|---|
| End bp | 853432 |
|---|
| Gene Length | 2337 bp |
|---|
| Protein Length | 778 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637283303 |
|---|
| Product | aminotransferase, class V |
|---|
| Protein accession | YP_267587 |
|---|
| Protein GI | 71281320 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases
[COG0607] Rhodanese-related sulfurtransferase
[COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0677783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATT TACCAAAAAA CATTCAGCAA CCACTCAGCC TAATTTACCT CGATGCCAAT
GCGACCACTC AAGTATTACC ACAAGCTGCA TCTGCAGCAC TATCAACCAT GGAAACACTC
TTCGGCAATC CCAGCAGTAG TCATATTTCT GGGCTACAAG CCAAGCAGAT AGTAGATAAA
ACACGCCAAC AAGCAAAGCG CATTGTTGGC GCTGCTGAAG GTAAAATCAT CTTCACCAGT
GGTGCAACTG AAGGTATTCA AACAGCAATA CTATCGGCAT TAGTGAATGT TAAGAAAACG
CTTAATAAGT CTCTTAATAA CAAAAGCTAT AGCCTTTTGT ATGGCGCAAC TGAACACAAA
GCTGTGCCAG AGTCGCTAAA GCACTGGAAC AAAATTCTGG AGATAAATGC TGAAATCAAA
GCGATTCCTG TTGATGAAAA AGGCCAATTA GATATGGCAT TTATCGCTAA AGAAGTGCCT
AACGCTTTGA TGGTTTGTAC TATGGCGGTC AACAATGAAA CTGGTGTTTA TCAAGATATA
AGTTTACTAG ACCAAACAAT ACGTACCAAT AATCCCAACG TAGCGTGGAT GGTAGATTGC
GTGCAAGCTT TAGGTAAAAC AGACCTAGTC TTAGCGCAAA CAAGTATTGA TTATGCACCT
TTTAGTGGGC ACAAACTCTA TGCTCCCAAA GGTATCGGTT TTATGTATGT TAAAGAAAAA
GCACCATTCA CCGCTTTTAT CGCCGGCGGT GGTCAAGAAA GTGGATTGCG TTCTGGCACC
GAAAATTTAC CTGGTTTAGC GGCATTAAGT GAAATTTTTA GCATGTTGTT AGGTGAAAGT
GAAGCTAGCT TTACCCCAAT AAAAACTTTG CACTTATACC GTCAGCAGTT AGTGTCAGCA
TTAACACAGG CATTTCCTGA GATCACTTTT AACCACAGCT TTGAAAACTC AGTAGCAACC
ACCCTTAATT TTGCTATTCC TGGATTTAGC TCGAAAGAAA TAATGGATTT ATTCGACGCT
GCCAATATAC GCGTAAGCTC AGGCTCAGCT TGTAGCTCTA AAGTTACCCG TAGTTTCGTT
TTAGATGCCA TGGGACTGCC CGCTTGGCAA AGTGAGTCAG CCATTAGAAT GTCATTTGGA
CCCGCGATGA CCCAAACAGA AATTGACATT GCCTGTAGCC GAATAGTTTC GGCCGCTCAA
GCACTGGTGC AGAGCTGTTT GACTCTTGAT AAAAAGAATA TTGATACACA GACCATGAAC
ACGAGTAGCA CCACTAATAA GACGGAGCTA GACGGTCTTG TGCAATTTAA AGCAGGCGGC
AGCTGTAGTT GGTTATATGT TGACAAAAAA ACAAGATCTG CGGTGTTTAT CGACCCTTTA
TCGGAAGTCA GTGAACGTCT ACAAACATTA TTGACTTGCC GCGGACTTAA TTTAGTTGCC
GTCATTGATA CCCATGGTCA TGCAGATCAT AAGTCTTGTC GTAATGGTAT CGCAAAGAAG
TTTTTAGCCG AGCAACAAAC TGAATACCTT GGCTGGCCAG CTGGTGCGCA AACAACAACC
ATTCATGGCC AAACATTCCA ATACCTTATT TTGGGTGATA AGTGGTTAAT CAAAGTCGCC
ACACCTGGTC ATACCGACGA CAGCATGAGC TTATTACTGT GCGATCCAGT CACTGATTCA
GCAGAAAAAT TACAGGTACA CTATGCCTTT TGTGGTGATC TTATTTTAAT GGATAGTATT
GGTCGAAGCA ATTTTTCAAC CAGTAGTGCG CCAGCAATGT ATTCAAGCTT AAAGTTAATG
AAGTCACTTA TCGGCAACAA TAGTTTGATT TGCCCAAGTC ATGATTATCA CAACGAATTT
ACTACCTGCC TTGAAACTGA AATGAAACGT AACTCGCTAC TTCGTCAAGT TATCAATAGT
GAAATAGATA TTGAAGAATT CACTAGTAAA AAAATTAAAA TGGATAAAGA TATAATCAAT
GAGTCTGGCA GTGAAATCAT GTGTGGCGCT TTAATAGGTG CTTGCCAAAA GGTTGTAGTA
CGTGAATATG ACAGCGCCAG CTTAACCAAG GCGGTAAAAA AGTCGAGTGA CATGAAATTA
ATTGATATCC GTGAACCACA CGAATACGCA CTACAACACG ATGAAAAATT CACCAGCAAT
GTTCCTTTGA CTCGACTAGT GCAATTTGTA AAAGAGCAAC AACAGAATAA AGAACAAGAA
TTCGTGTTGG TTTGTCGTAG TGGCGGTCGC TCTCAATTAG CCGCTCAAGC ACTAGCTCGG
TTAGGTTTTG AAAATGTTGG CCATTTGAAA GGTGGTTATG CTTTACATCA GTACTAA
|
|---|
| Protein sequence | MMNLPKNIQQ PLSLIYLDAN ATTQVLPQAA SAALSTMETL FGNPSSSHIS GLQAKQIVDK
TRQQAKRIVG AAEGKIIFTS GATEGIQTAI LSALVNVKKT LNKSLNNKSY SLLYGATEHK
AVPESLKHWN KILEINAEIK AIPVDEKGQL DMAFIAKEVP NALMVCTMAV NNETGVYQDI
SLLDQTIRTN NPNVAWMVDC VQALGKTDLV LAQTSIDYAP FSGHKLYAPK GIGFMYVKEK
APFTAFIAGG GQESGLRSGT ENLPGLAALS EIFSMLLGES EASFTPIKTL HLYRQQLVSA
LTQAFPEITF NHSFENSVAT TLNFAIPGFS SKEIMDLFDA ANIRVSSGSA CSSKVTRSFV
LDAMGLPAWQ SESAIRMSFG PAMTQTEIDI ACSRIVSAAQ ALVQSCLTLD KKNIDTQTMN
TSSTTNKTEL DGLVQFKAGG SCSWLYVDKK TRSAVFIDPL SEVSERLQTL LTCRGLNLVA
VIDTHGHADH KSCRNGIAKK FLAEQQTEYL GWPAGAQTTT IHGQTFQYLI LGDKWLIKVA
TPGHTDDSMS LLLCDPVTDS AEKLQVHYAF CGDLILMDSI GRSNFSTSSA PAMYSSLKLM
KSLIGNNSLI CPSHDYHNEF TTCLETEMKR NSLLRQVINS EIDIEEFTSK KIKMDKDIIN
ESGSEIMCGA LIGACQKVVV REYDSASLTK AVKKSSDMKL IDIREPHEYA LQHDEKFTSN
VPLTRLVQFV KEQQQNKEQE FVLVCRSGGR SQLAAQALAR LGFENVGHLK GGYALHQY
|
|---|
| |