| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0774 |
|---|
| Symbol | |
|---|
| ID | 3518948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 791518 |
|---|
| End bp | 792774 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637283239 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_267523 |
|---|
| Protein GI | 71278458 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.479896 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAC AGAGAGAAGC CGTTCAAAAA CCACTTTGGA AAAAATATTG GTTTGTTTTA
CCAGTATTTA TTTTACTCAT CGGCACTTAT TCATTAAGAA ATGTTTTAGG TAACGCCTCT
TACTTTATTG AACGAAGCGC TGTTGTTACT GCCAAGGTAG AGCAGGGTGA TTTTCGAGTG
AATGTACGTG CAACAGGTGT TTTAAAACCA CTTAATATTC GTTGGGTATC TTCACAAGTT
TCAGGTAGAG CAGAGCAAGT TCTTGTTAAA GCAGGCGCAA AAGTCAATAA AGGTGATGTG
CTTGTACAAT TATCTAACCC TGAACTACAT CGTAATTTAG AAAAGGCGCG TTGGGAACTC
GAAGCAAAAA AAGCTGAAAG TCATGTTGCT TTTGTGATGC TAGAATCTCA GATGGTTGAT
TTAGAAAATT CAGTATTGTC CGCAGAATAC AGCTATCAAT CAGCGAAACT AAAACTTGAT
GCAGAGACTG CATTATTAGC ACAAGGTAAT GCGACAGTTT CTGCGCTTGA ATACCAAAGA
AGCCAATTAA CCGTTAAGCA GCAAATGCAA TATTGGCGCG CTCAGCAACA AAAAACTGAA
AAAATGAAAG CGAATATGGC GGCAACAAAA ATTGCTCAAC AAGCCCGTAT TGGTTTAGTT
GAAAATAATT ATCAGCGGGT GCAAGAGCAA GTCGCAGCGC TGCAAGTGAG ATCATCTACA
TCTGGTGTTG TTCAACAAGT ATCATTAGAG CTCGGTGAAC GTGCTCAAGT GGGAGATAGT
GTTGCTTTAG TGGCTGATCA AAATACTTTG TTTGCAGAAC TACAAGTGCA AGAGGTTAGA
GTAAGAGATA TTGCCCTAGG CCAATTGGTG ACTATTGATA CTCGCACCAC TGAGATTATT
GGTGAAGTGA CGCGTATCGA CCCAGCGGTA AAATCTGGCA TGGTGTTAGT TGATGTTAAG
TTAATCGGTG ATCTACCAGC AGAAGCTCGT CCTGAATTAA CAGTTGATGG CTTAATTGCC
ATTAGCAATA TTGAAAATGC TTTATATGTA AAACGTCCTG TTTATGCGCC AAGACATACT
AAAGTTGGCC TGTATAAACT GAGCCAAGAT CAGCAATTTG CGAGTAAATA TTCTGTTGGT
TTAGGTCAAA GTTCTGTGAA TAAAATTCAA ATTATTGATG GTTTGATGCT TGGCGATGAA
ATTATTATTT CAGACACGTC AAGCTGGCAA GAACATCAAG AGATTAAGAT CAATTAA
|
|---|
| Protein sequence | MDIQREAVQK PLWKKYWFVL PVFILLIGTY SLRNVLGNAS YFIERSAVVT AKVEQGDFRV
NVRATGVLKP LNIRWVSSQV SGRAEQVLVK AGAKVNKGDV LVQLSNPELH RNLEKARWEL
EAKKAESHVA FVMLESQMVD LENSVLSAEY SYQSAKLKLD AETALLAQGN ATVSALEYQR
SQLTVKQQMQ YWRAQQQKTE KMKANMAATK IAQQARIGLV ENNYQRVQEQ VAALQVRSST
SGVVQQVSLE LGERAQVGDS VALVADQNTL FAELQVQEVR VRDIALGQLV TIDTRTTEII
GEVTRIDPAV KSGMVLVDVK LIGDLPAEAR PELTVDGLIA ISNIENALYV KRPVYAPRHT
KVGLYKLSQD QQFASKYSVG LGQSSVNKIQ IIDGLMLGDE IIISDTSSWQ EHQEIKIN
|
|---|
| |