Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0546 |
Symbol | |
ID | 3521183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 543186 |
End bp | 544955 |
Gene Length | 1770 bp |
Protein Length | 589 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 637283011 |
Product | GGDEF domain-containing protein |
Protein accession | YP_267304 |
Protein GI | 71280714 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAATAAGA ACATTTTAAC GTTTTTCATC ATTATCAGCT TTTTTACAAC GGCTAATGCA AGTGCTGATT TTGATGCAAA GTTGTCTCTA GCAGATAGTA TTAGAAGTAG TAAGCCGCAA GAATTTTCTG TCATAATTAA AGGACTAAAC CAAGAAAAAA GCAAGTTATC AACCGCCCAA TATCAACACC TTAAGTACCT CAATACCTAT TCATTAATGT TTCAAGGAAA GCTTGATGAA GCTATCTATT TAGCCAAAGA AATTATCATT TCAGATGCTA ATGAAACGTT AAAGTTCAGA GCCAAAATCA GTCTAATGAA TATATTTGCT AATAGGCAGA ATTGGACGGA AGGGTTAACC AATTTATCAA GCCTCCTAAA AGACCTACCC TCAGTAAAAA ATGAAGACTT TCATCAATTG GCCCTAGTGG CGGCTAGCAT GTTTTATAAT CAACTTGGGC AATATCAACT AGCTCTTTCT TATGCAAAGA AGATAGAGGC TAGAGCGGGC CAAAATAGAA ATCAATGTCT TGCAAAAGGC TTTATCGTTG AAGCTTTATC AAAGTCACAT CAATTATCGA CTAACGACCC CATCATTGAA CAAGCTATTG AAGTTTGTCG TAAAAATAAT GAAATTCTTA TGGTGAGTTT TATTAATTCT CATATTGTTA GAACATATAT TTACAACGAG CAATTTATAA AAGCGATCGA ATTGTTAAAT GCAACTCTAC AGTCAACCGT TAATATCAAT TTCTCTAGGA TAACAGCTGA ATATTACTCT TTATTAGCAA ATGCATATTG GCAAACCAAC GAATTAGCTA AAGCACAATA CTTTGCCCTA AAAACACTAG AAAGTAAAAA TCAATTAAGC TCCCGAAAAG CAAAAATATT AGCTAACCAC CTGCTTTATA AAATATATAA ACATCAAAAT AATTTAGAGC TCGCACTAAG TTATTTTGAA GTTTATAGCG AATTAGGTAA AGAGCACCTA AAGGGCGAAA AAGCCAAGCA CTTCGCATTC CAACTGGCAG AGCACCAGAA TATTGAACAA GAAAGCAAGA TTAAATTACT CAATGAAAAA AATTCTTTAT TACTCAGTGA CCAAGCATTA AGTAAGGCCA AAGTTGTCAA TATTCAGTTA ATGATTTCTA TCTTAATGGT GACGCTCGCT TTATTAGTAT TATGGGGAGC TCGTTTGTTA AAAGCACATA AACGTGTAAG AGAATTGGCC GAATATGATC CGTTAACCGG AATTTATAAT CGAGGTCATT TTACCCATGT GACCAATAGC GCCTTAAAAT ATTGTAAAAA TGCTCAACAA GACTTGTCTG TGATTATGTT CGATTTAGAT CACTTCAAAA AAGTTAACGA CTCTTTTGGT CATGCCTGCG GTGACTGGGC ATTAAAAGAG ACCATAAAAG TTTGTCAACG TATTGGCCGT AAAAATGATA TTTTTGCCCG CTTAGGTGGT GAAGAATTTT GTTTGGTATT AACATGTTGT ACTATTGATG TGGCAATGCT GCGCGCCGAA GCTTGTCGTG CGGCAATTGA AGAAATAATT ACCGAAGAAT CTGGGAATGA TTTTTCAATC ACTGCTAGCT TTGGCGTAAC TGATATCAAA CGTTCTGGAT TTACTTTAGA CAAGCTATTA GCGGATGCGG ATATGGCCGC TTACGCATCA AAAAATGCAG GCCGTAACAG AGTCACTCTG TTCGAAGTAC CTTACACAGC TAAAGCAAAT AAATTAGATG ACTCATGGAA CTATAACTAA
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Protein sequence | MNKNILTFFI IISFFTTANA SADFDAKLSL ADSIRSSKPQ EFSVIIKGLN QEKSKLSTAQ YQHLKYLNTY SLMFQGKLDE AIYLAKEIII SDANETLKFR AKISLMNIFA NRQNWTEGLT NLSSLLKDLP SVKNEDFHQL ALVAASMFYN QLGQYQLALS YAKKIEARAG QNRNQCLAKG FIVEALSKSH QLSTNDPIIE QAIEVCRKNN EILMVSFINS HIVRTYIYNE QFIKAIELLN ATLQSTVNIN FSRITAEYYS LLANAYWQTN ELAKAQYFAL KTLESKNQLS SRKAKILANH LLYKIYKHQN NLELALSYFE VYSELGKEHL KGEKAKHFAF QLAEHQNIEQ ESKIKLLNEK NSLLLSDQAL SKAKVVNIQL MISILMVTLA LLVLWGARLL KAHKRVRELA EYDPLTGIYN RGHFTHVTNS ALKYCKNAQQ DLSVIMFDLD HFKKVNDSFG HACGDWALKE TIKVCQRIGR KNDIFARLGG EEFCLVLTCC TIDVAMLRAE ACRAAIEEII TEESGNDFSI TASFGVTDIK RSGFTLDKLL ADADMAAYAS KNAGRNRVTL FEVPYTAKAN KLDDSWNYN
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