Gene CPS_0535 details

Gene Information

• Locus tag: CPS_0535
• ID: 3522847
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 532046
• End bp: 534064
• Gene Length: 2019 bp
• Protein Length: 672 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637283000
• Product: amidohydrolase family protein
• Protein accession: YP_267293
• Protein GI: 71282373
• COG category: [F] Nucleotide transport and metabolism; [R] General function prediction only
• COG ID: [COG0402] Cytosine deaminase and related metal-dependent hydrolases

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTGGT CACTTTTACG ATTACTCTTA GCGCTTTCAT CCATGGTATC GGCTCTAGTT 
TTTGCCAATA ACACATCCAT TACTAATCTT GTTTATTCAG AGAAAGGATT AGCAGGTAAA 
CAGATCATGA CAAAGGTCTC AGATACTCAA TACCATGGTA GCTTGGACTT GCGTTGGAAC 
AATCGTGTTT TCAAAGTTGA TGAAAAAATA AAGCTTAATG AAAAGGGGCA AGTTTTAAGC 
TTTGAGTCTA CCGGCCTGTC GCCATTTGGT GCTGCTATTG CAGAGTCGTT TAAATGGCAA 
GATGGCATTG CTAGTTGGGA AAGTAACAAA GAAGACGGCA GAGTCAAATC TACAGGTGAA 
CGATTTTATC TACCGGTAAA TAGTGCCGTT GTTGCTGAAA ACTTAATGGT GCAAGCCATG 
TTAAAGAATA TAGGGAACTC TATAGAGCTA TTACCGTCAG GGACTGCAAG GTTAACAGAA 
TTAAAAACTG TTAAGTTATC AGCAGAGAGT GGCTCAGAGC AAGTTACCTT ATACGCTATC 
AGTGGTTTAG GTTTTACCCC TGACTTTAGC TGGTATGACA GCCAAGGAAA TTTTTTTGCT 
AAAGATCACT CGGGTTTTAT GAAAGTAATT CGTGAAGGTT TTACATTAGA TGATTTTGAC 
AAACTAAAAG TAATTCAAAA CTCAGCTGAA CAAGAATATC TCGAAGGTGT TTCTAGTAAA 
TTAAGTCACT CTTATACAAC CTTGTTGATT AAAAACGCCC AAGTAGTCGA TGTAATTAAT 
TCTGTGGTTC TTAAAAATAC AGATGTATTA TTTAAAAATG GCAAGGTGTC TCATGTTGCT 
AAAAATATTA ATGTGCCCGA AAACACACCA ACTATTGATG GTTCGGGAAA GACTTTGATA 
CCTGGGTTGT GGGATATGCA CGGTCACTTA AGTAAAGGTG ATGGTTTGCT TAATATAGCT 
GCGGGAGTAA CAAATGTTCG AGATGTTGGT AACAGCCATG ACAATATAAT GACGATAGAG 
CGGTTATTTA ATACTAACCA GGTAATTGGT AATCGTGTTT TTAGAGCAGG TTTTTTTGAC 
CAAATGAGTG AGTTTTCTGC TGGTTTGTCG GTGAAGTCAT TAGCCGAAGC CCATGAGAAG 
ATAGATTGGT TTGCTGATAA TGGTTACATA CAAATCAAAC TCTATAGCTC TATCGATCCT 
ACGTGGGTTG AGTCCATTGC AAAACATGCA CATAGTCGAG GTTTGCGTTT AAGTGGTCAT 
ATACCTGCAT TCATGACAGC AGAGCAAGCT GTTAAAGCAG GTTATGATGA AATACAGCAT 
ATTAATATGC TGTTTTTAAA CTTTTTGGCT GGTACAGAAG TCGATACTCG TCAGCAACTC 
CGCTTCACCT TAATCGGTGA AAAAGCGGGA GACGTAGACA TTAATAGTAA AGAGTTTAAT 
GACTTTATTC AGTTACTCGC CGATAACCAG ACAGTTATTG ACCCTACGAT ATCAACATTT 
AGAAGTTTAC TATTAAAAGA AAGAAAAAAA ATTGATCCTG AGTTCCTTGC TGTTGCTGAG 
CATTTACCTC CTAATGTTTT ACGCCAATTA AAAGGTGCTG AAATGAATGT GTCAGATGAT 
TTAAAGGATA ACTACCAAGC AGGAGCTGAT GCTATGTCGG CTTTGGTTAA GAAGTTATAC 
GACAAAGGGG TGCCTATTGT TCCTGGCACA GATAACATCG CTGGATTCAC ACTCCAACGT 
GAGCTTGAAT TATACGCTGA TGCTGGTATC CCTGAAATGG ATGTTCTTAA AATTGCTAGT 
ATAAACTCAG CCAGACTTGT TGGAGCAGCA CATTATTTGG GATCTATCAC CGAGGGTAAA 
TCAGCTGACG TGCTTTTGAT TGATGGTGAC CCACTCACAG ACATGTCAGT TTTAAGAAAA 
ACTTCCTTGG TGATAAAAGA TAACCATTTT TATAAACCGG AAGAATTGTA CAAAATACTT 
GGAGTAAAGC CCTTTACGCC ATCAAGCCAT TTGCAGTAA 

 

Protein sequence

MNWSLLRLLL ALSSMVSALV FANNTSITNL VYSEKGLAGK QIMTKVSDTQ YHGSLDLRWN 
NRVFKVDEKI KLNEKGQVLS FESTGLSPFG AAIAESFKWQ DGIASWESNK EDGRVKSTGE 
RFYLPVNSAV VAENLMVQAM LKNIGNSIEL LPSGTARLTE LKTVKLSAES GSEQVTLYAI 
SGLGFTPDFS WYDSQGNFFA KDHSGFMKVI REGFTLDDFD KLKVIQNSAE QEYLEGVSSK 
LSHSYTTLLI KNAQVVDVIN SVVLKNTDVL FKNGKVSHVA KNINVPENTP TIDGSGKTLI 
PGLWDMHGHL SKGDGLLNIA AGVTNVRDVG NSHDNIMTIE RLFNTNQVIG NRVFRAGFFD 
QMSEFSAGLS VKSLAEAHEK IDWFADNGYI QIKLYSSIDP TWVESIAKHA HSRGLRLSGH 
IPAFMTAEQA VKAGYDEIQH INMLFLNFLA GTEVDTRQQL RFTLIGEKAG DVDINSKEFN 
DFIQLLADNQ TVIDPTISTF RSLLLKERKK IDPEFLAVAE HLPPNVLRQL KGAEMNVSDD 
LKDNYQAGAD AMSALVKKLY DKGVPIVPGT DNIAGFTLQR ELELYADAGI PEMDVLKIAS 
INSARLVGAA HYLGSITEGK SADVLLIDGD PLTDMSVLRK TSLVIKDNHF YKPEELYKIL 
GVKPFTPSSH LQ