| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0531 |
|---|
| Symbol | |
|---|
| ID | 3519905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 529237 |
|---|
| End bp | 530109 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637282996 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_267289 |
|---|
| Protein GI | 71279446 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.468222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAATC TTGTTTGGTT AAAAACATTT TGCTCCCTCG TTGATATTGG CCACTTTACA
CAAACTGCTG AAAAGTTATT TATGACTCAA TCAGGAGTCA GCCAACATAT AAAGAAACTG
GAGCAGCACC TAGATACCTT CCTACTTGTA CGCGAAGGGA AATCTTTTTC ACTTACCGAT
GCCGGTGATA AGCTTTACCA GCAAGGTCAA ATCTTATTAA GAAGCTCAGA AGAAATAGAA
GCATCGATTA AACATGATGA TCCCTTAATA GGCACAGTTA AAATAACCAC GCCTGGCAGT
GTCGGTTTAA AGTTATATCC CCAGCTATTG GACATACAAC AATCCCATCC AACATTAGTT
ATTGATTATA TGTTTGCGCC AAATTCAAGC ATAGAACAAG ACTTAATCGA TAGAAAGGTG
GATATAGGTT TACTTACCGA GCAGACAAAA AGCTCAACCT TAATGAGCAC GCCAATAGCG
GTAGAGCCCT TAGTATTAGT TACATCAAAG CAAACTCAAG TGATTAACTG GCAAACATTA
ATTGCTCTTG GTTTTATCGG CCATCCTGAT GCTGAGCATC ATACGCAACA ATTATTAAGT
GAAAATTATC ATGAGTTTGA ACATATCAAT CAGTTTGAAC GTACTGGATT TTCAAATCAA
ATCAGCTTAA TTTTAGAACC CGTTAGTCGC GGTTTAGGTT TTACTGTGCT ACCTCTACAT
GCTGTGAATG CTTTTCATAA GCAAGACGAC ATTGCAGTAC ATTTTTTAAA ACATACGGTT
AATGAAACCT TATACCTTTG CCAAAACAGT CTCTCCTTTG AAAATAGTCG CACGCAATAT
ATTAAATCTC TCATCATTGA TTTTATTAGT TAA
|
|---|
| Protein sequence | MINLVWLKTF CSLVDIGHFT QTAEKLFMTQ SGVSQHIKKL EQHLDTFLLV REGKSFSLTD
AGDKLYQQGQ ILLRSSEEIE ASIKHDDPLI GTVKITTPGS VGLKLYPQLL DIQQSHPTLV
IDYMFAPNSS IEQDLIDRKV DIGLLTEQTK SSTLMSTPIA VEPLVLVTSK QTQVINWQTL
IALGFIGHPD AEHHTQQLLS ENYHEFEHIN QFERTGFSNQ ISLILEPVSR GLGFTVLPLH
AVNAFHKQDD IAVHFLKHTV NETLYLCQNS LSFENSRTQY IKSLIIDFIS
|
|---|
| |