| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0523 |
|---|
| Symbol | |
|---|
| ID | 3519037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 520083 |
|---|
| End bp | 520694 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637282988 |
|---|
| Product | hydrolase, HAD-family protein |
|---|
| Protein accession | YP_267281 |
|---|
| Protein GI | 71278352 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0171673 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTAACAC ATAAACTGCT AGGCGTTATT TTTGACCTCG ACAACACCTT GGTTTCTTCA
TCATTAAATT TTGATAATAT TCGAAAAGCG TTAGGTTGTT CGAAAAATAT CGATTTATTG
AATTTTGTTG ACTCATTACC GAAACAGCAA AGAATTGATG CCCATCAAGT GTTAGTTGAC
TATGAAATCA ATGATGCCAA TAGCGCTAGT AAGTTGGCTG GTACTGATGA ACTCTTAGCA
TTATTGTCCA AACTCTCGAT ACCTTGCGCT ATTGTCACAC GAAATTGCAA ACAAGCGGCT
TTGATAAAGC TAAACAATAA TAATATTGAT GTTCCTATCC TATTAACGCG GGAAGATCAT
AAAGCTAAAC CGGCCCCTGA TGCTTTATTA CATTTAGCCC AATACTGGAA CACCCCACCA
GAAAACTTAT TGTATGTAGG TGACTACTTA TATGATCTGC AAGCAGCCCA AAATGCTAAT
ACTATGTCTT GCCTTGTGAC TTATGCTAAA GCGTTGAGTT ATGCAGGTTT AGCGGATATT
GTAGTGGATG ACCTTTCTGA GCTATGTGAC GTAATTAAAC AAAATATGCG GGTGCTACTC
GCGATACCCT AA
|
|---|
| Protein sequence | MLTHKLLGVI FDLDNTLVSS SLNFDNIRKA LGCSKNIDLL NFVDSLPKQQ RIDAHQVLVD
YEINDANSAS KLAGTDELLA LLSKLSIPCA IVTRNCKQAA LIKLNNNNID VPILLTREDH
KAKPAPDALL HLAQYWNTPP ENLLYVGDYL YDLQAAQNAN TMSCLVTYAK ALSYAGLADI
VVDDLSELCD VIKQNMRVLL AIP
|
|---|
| |