| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0217 |
|---|
| Symbol | bioH |
|---|
| ID | 3521779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 223111 |
|---|
| End bp | 223932 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637282683 |
|---|
| Product | bioH protein |
|---|
| Protein accession | YP_266984 |
|---|
| Protein GI | 71281308 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | [TIGR01738] putative pimeloyl-BioC--CoA transferase BioH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.59691 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAA GCTTAACATT TTCCACATTT TCTCCTAATA ACACACTAAA AAAAAATGTA
ATTCCTATTG TTCTTCTTCA TGGTTGGGGG TTAAATTCAG GTGTTTGGCA GCCACTGTTA
GAGTTATTCC ATAGAAACGA TGAGAGTATC TATCAGCTCA TAACCATTGA TCTACCAGGC
TTTGGTATCA ATAGCGCTGT TGATATAAAA CCTTACTCTT TAGCAAATAT TTGCCATCAT
ATCGAACAAG TAATTGACCA ACCGGCTATT TACCTTGGTT GGTCATTAGG CGGCTTAATA
GCGACGGAAA TGTCACTTAA GTACCCAGAG AAAGTATTAG CATCAATTAC TGTTGCCAGT
AGCCCATATT TTGTCGAACA ACCGACAGAT AACTGGCCAG GTATAAAAGA AAATGTATTA
GAGAGCTTTC ATAAACAATT AGCACAAGAT ACTGCGAAAA CAATTAGTGG TTTTTTAAAG
ATTCAAGCAA TGGGCAGCCC TCATATCCGA CAAGACTTAA AACTAATTAC CCAGTTAGTT
ATGGCACATA CTCTCCCTAG TCAGCAAACT TTAGCTGACT CACTCGCGTT ATTAAGTAAC
AGTGATCTTC GCCTACATTT ATCAAAAATC AAACAACCAC TTCTACGGTT ATACGGGCAT
AACGATAGCT TAGTGCCCAA AGAAGTAATG GAAAAAATCA GTTATTTAGC ACCAAATAGT
GACCAACACT TATTTGCTGA TGCTTCTCAT GCACCATTTA TTTCTCACCT TGATGATTTT
TATCAGGTAT TAGTCGTTTG GCTTGATTCA CACTTTAACT AA
|
|---|
| Protein sequence | MAKSLTFSTF SPNNTLKKNV IPIVLLHGWG LNSGVWQPLL ELFHRNDESI YQLITIDLPG
FGINSAVDIK PYSLANICHH IEQVIDQPAI YLGWSLGGLI ATEMSLKYPE KVLASITVAS
SPYFVEQPTD NWPGIKENVL ESFHKQLAQD TAKTISGFLK IQAMGSPHIR QDLKLITQLV
MAHTLPSQQT LADSLALLSN SDLRLHLSKI KQPLLRLYGH NDSLVPKEVM EKISYLAPNS
DQHLFADASH APFISHLDDF YQVLVVWLDS HFN
|
|---|
| |