Gene CPS_0148 details

Gene Information

• Locus tag: CPS_0148
• ID: 3522041
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 157758
• End bp: 158363
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637282615
• Product: cold shock DNA-binding domain-containing protein
• Protein accession: YP_266916
• Protein GI: 71281569
• COG category: [K] Transcription; [S] Function unknown
• COG ID: [COG1278] Cold shock proteins; [COG3326] Predicted membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTTTAA CAGGAAAACT CATTAGATGG AACACCGATA AAGCCTTTGG TTTTATAACA 
CCAAATGGCA GTGGTGATAC TATTTTTATA CACAAAACGG CTTTGAAAAA CCGAAATAGA 
ACACCCAAAA TCAACGATAT TATTAGCTTC TCAGTAATAC AAGATAACCA AGGGAGATAT 
TGCGCAGATC AGGCAACATT TGCTGGTGAA AAATCACATA AAAAGCAAAC CAAAAATATA 
AGTACATTCT CAATTTATCT GTCCCTGATA TTCATTACTT TAGTCGCTAT TGCTTATCTT 
CTTGATTACC TGCCCCAGAA AATATTACTG GTTTACTTAG GCGTTAGTCT TATGACTTTT 
CTCGTCTATG CCTTTGATAA ATCAAAAGCA CAGCGGGGAA AGTGGCGCAC ACAAGAAAGC 
ACTTTGCACT TATTAGCACT ACTTGGCGGG TGGCCTGGTG CTGCTCTTGC ACAACAATTG 
CTTAGACATA AATCTAAAAA GAAGGAGTTT AGGGTAACAT TTTGGTTTAC CGTAGTTATT 
AATACCGCAA CGCTAGTTTG GTTGATGACG GCTCACGGGA GGCCATTTTT AAGTTATTTT 
TCTTAG 

 

Protein sequence

MRLTGKLIRW NTDKAFGFIT PNGSGDTIFI HKTALKNRNR TPKINDIISF SVIQDNQGRY 
CADQATFAGE KSHKKQTKNI STFSIYLSLI FITLVAIAYL LDYLPQKILL VYLGVSLMTF 
LVYAFDKSKA QRGKWRTQES TLHLLALLGG WPGAALAQQL LRHKSKKKEF RVTFWFTVVI 
NTATLVWLMT AHGRPFLSYF S