| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0109 |
|---|
| Symbol | |
|---|
| ID | 3522773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 115603 |
|---|
| End bp | 117324 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637282576 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_266877 |
|---|
| Protein GI | 71282300 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTATG ACATTTGCAT CATTGGTAGC GGCGCTGGTG CCTCCCCTAT TGCCCATCAG
TTATCAAAAG CGGGAGCTAA AGTATTAGTC CTTGAAAAAG GCCCTTGGTT AACTGAAAAA
GAGTTCTTCA AAGATGAACT GACCATTAGT ATTCATGACG CTTACAACCC AAAGCTAACT
GATGAGCAAC ATGTCATTGA AGAAGAATAT TTCGATGAAA ATGATAAACC TTTCTGGCAA
GGTGAAAAAA CCAGTGATTC TGGCTGGAGT TGGTGGAATG GCAACGTTGT CGGTGGTTCT
TCAAACTTCA TGAGTGGTTA CTTTCATCGC TTAAAACCCA TTGATTTTCG CTTAAAATCT
GAGTTTGGTG CTATTAGTGG TGCCAACGTC GAAGATTGGC CGATTAGTTA CGACGAACTC
GAACCTTATT ATGCCAAAGT AGAGCGTGAA GTGGGTGTCT CGGGTCGTGT GGTGGAACAT
CCACATCAAG AGCCACGCTC AACAGACTTC CCCTACCCGC CTATTGCCGA ATTACCGATG
TCTTCTTGGA TAGATAAAGC AGCTCAAAAA ATTGGCTATC ATGCCATTCC TGTACCCAGA
GCCATTTTGT CAAAACCCGC CATGGGCAGA CGCAGTTGTG AATATTCTGG TTACTGCAGC
AGTTATGGCT GTGCTTCAGG TGCTAAAGGT AGTGGTCGAG CAGCATTATT AAATAACGCA
GTGGCATCAG GTAATTGCAC CATTCAAGCC AATGCAAAAG TCTATAAAAT TGCCACTGAT
AAACAAGGTG AAATTACCGG CGTGCACTAT TACGATAAAA TAGGCCGTAA AAAATCAGTA
ACCGCCAAAA TATATGTGGT GGCTTGCCAA GCAGTAGAGA CTTCTCGTTT ATTACTGGCC
TCAACAGGTG AGAAATTTCC ACAAGGTCTC GCCAACAATA ACGGCCAAGT TGGTAAAAAC
TTGCTCTTTA GTGGCGGTGG CACCGGACAA GGTGACTTTA ATTATGCAGA TTTATCAGAC
AAACAAGTCG GTGAATTAAA ACAAGTAGGT CCTTTTATTA ATCGCGCCTT GCAAGATTGG
TATCAAATAG CGGATAAAAG CTTTACTGGT GCCAATGCTA AAGGACAAGC TAAAGGCGGC
ACTATCGACT TTTTGTTCCA CCAAAATCCC ATCGCTAGAG CACGCGGAAC GCAGTGGGGC
TCAGATCAAA ATGGTGATGA TAAACTGCTG TGGGGCGAAG ATTTAAAACA AAGTTTGAAA
ACAGAGTTTA CCAGTTATAA AACGCTGCGC TTTGAAGTGT TTAATGATTG GCTGCCAACT
GACGATTGTT TTGTCAGCTT AGATAACGAA GTAACAGATC AATGGGGCGA TCCGGTAGCC
AAAGTCCGCA TTGGCTATCA TGATCATGAC CTTGAGGTGG GCGAATACTT ATCTAAAAAA
GCAGAAAAGC TACTCGAAGC CTTAGGTGCA AAAAATGTCT CTTCTTCAGT GAGTGGCTAT
CCTTCAACAA ACTTAATGGC TGGTGGTTGT CGCTTCGGCA ATGATCCTAA AACCTCAGTG
CTTAATAAAA CCTGCCAAGC CCATGAAGTT GATAATTTAT ATGTTACTGA TGGCTCCTTT
ATGCCAACTG GTGGCAGCGT ACCCTACACT TTTACTATTT ATGCTAACGC CTTTCGGGTT
GCTGATAAAA TAAAAGCACA TTGGTTAACC CTGAAAAGCT AA
|
|---|
| Protein sequence | MSYDICIIGS GAGASPIAHQ LSKAGAKVLV LEKGPWLTEK EFFKDELTIS IHDAYNPKLT
DEQHVIEEEY FDENDKPFWQ GEKTSDSGWS WWNGNVVGGS SNFMSGYFHR LKPIDFRLKS
EFGAISGANV EDWPISYDEL EPYYAKVERE VGVSGRVVEH PHQEPRSTDF PYPPIAELPM
SSWIDKAAQK IGYHAIPVPR AILSKPAMGR RSCEYSGYCS SYGCASGAKG SGRAALLNNA
VASGNCTIQA NAKVYKIATD KQGEITGVHY YDKIGRKKSV TAKIYVVACQ AVETSRLLLA
STGEKFPQGL ANNNGQVGKN LLFSGGGTGQ GDFNYADLSD KQVGELKQVG PFINRALQDW
YQIADKSFTG ANAKGQAKGG TIDFLFHQNP IARARGTQWG SDQNGDDKLL WGEDLKQSLK
TEFTSYKTLR FEVFNDWLPT DDCFVSLDNE VTDQWGDPVA KVRIGYHDHD LEVGEYLSKK
AEKLLEALGA KNVSSSVSGY PSTNLMAGGC RFGNDPKTSV LNKTCQAHEV DNLYVTDGSF
MPTGGSVPYT FTIYANAFRV ADKIKAHWLT LKS
|
|---|
| |