Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp1085 |
Symbol | cpaF2 |
ID | 1223397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 1376464 |
End bp | 1377816 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637240950 |
Product | secretion ATPase protein |
Protein accession | NP_522646 |
Protein GI | 17549306 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACAAC CCATCGAGTT CTCCAACCAG ACCGACGCGG GCAACGGCGC GTTTGCCGTC TCGCAGGCCT TCCAGGACAT CAAGGAAGCC GCGCACGAGC ACCTGCTGAC CCGCATCGAG GAGCTTGGCG CCGAGTTCGG CCGGTGGTCG CGCAGCGCCA TCCAGCGCTT CGTGGACCTG GAGGTCGAGG GCTTCACCCG CATGCGCCGC ATTCCCGTCA ACGAGACCGA GGTGCGGGAG ATCGCCGAGG CGCTGACCAA GGAGCTGGCC GGCTTCGGAC CGATCGAAGA CCTGCTGGCC GACCCGGCGG TGGAAGACAT CCTGGTCAAT GGCCACCTGG ACGTGTATGT GTCGCGGCAT GGCGTGCTGG AGCGCATTCC GGTGCGCTTT GCCGACAACA ACCACCTGCT GCGCATCGTG CGCCGCATCC TCGCGCCGAT CGGGCGCCGG CTGGACGAGT CGAACCCGAT GGTCGATGCC CGCCTGCCGG ACGGCGGCCG CATCAACGTG GTGATTCCGC CGCTGGCGCT GGAAGGGCCG GTGGTGTCGA TCCGCAAGTT CCGCAAGGAT CCGCTCAAGC CCGAAGACCT GCTCGGCCTG GGCACCATGA ACGAAGAGAT CGGGGAGCTG CTGCGCGCGG CGGTGCGGGC GCGCTGCAAC ATCCTCGTCA GCGGCGGGAC CAGCTCGGGC AAGACCTCGC TGCTCAATGC GCTGGCGTAT CACATCCCGA CCACCGAGCG GGTCATCACC ATCGAAGACA CGGCGGAGCT TTCGCTCAAC CACCCGCACG TGGTGCGGCT GGAAAGCCGG CCCGGCGGCT TCGAGGGCAC GGGCGTGGTC ACCATCCGCG AGCTGCTGCG CAACAGCCTG CGGATGCGGC CCGACCGCAT CATCGTGGGT GAAGTGCGCG GCGGCGAGGT GCTGGAGATG CTGCAGGCCA TGAGCACCGG CCACGACGGG TCGATGGGCA CGATCCACTC CAGCAGCCCG CGCGAGTGCC TGTACCGGCT GGAGATGCTG GCGGGCTTTG CCGGCTTCCA GGGCAGCGAG GTGAGTCTGC GGCGGCAGAT CACCAATGCC ATCGACTTCA TCGTCCAGAT CGGGCGGCTG TCCAACGGCA AGCGGCGCAT CCTGTCGGTG ACGGAGATCA CCGGGCTGGG CGACAACATC GTCTCCACGC AGGAGCTGTA CCGCTACGAA CCCTATATCG GCCCCGACGG CGAAGAGCTG GACCGCTGGA CGTCGCTCGG CCTGCAGCCG CATTCGCCCA AGCTGGCGCG CATGCGCAAC GCGGCGGCGG ATGGCGGCGG CCTGGGTGCC GGCTTCGGCG GGGGAGGACG CTTCCATGTC TGA
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Protein sequence | MTQPIEFSNQ TDAGNGAFAV SQAFQDIKEA AHEHLLTRIE ELGAEFGRWS RSAIQRFVDL EVEGFTRMRR IPVNETEVRE IAEALTKELA GFGPIEDLLA DPAVEDILVN GHLDVYVSRH GVLERIPVRF ADNNHLLRIV RRILAPIGRR LDESNPMVDA RLPDGGRINV VIPPLALEGP VVSIRKFRKD PLKPEDLLGL GTMNEEIGEL LRAAVRARCN ILVSGGTSSG KTSLLNALAY HIPTTERVIT IEDTAELSLN HPHVVRLESR PGGFEGTGVV TIRELLRNSL RMRPDRIIVG EVRGGEVLEM LQAMSTGHDG SMGTIHSSSP RECLYRLEML AGFAGFQGSE VSLRRQITNA IDFIVQIGRL SNGKRRILSV TEITGLGDNI VSTQELYRYE PYIGPDGEEL DRWTSLGLQP HSPKLARMRN AAADGGGLGA GFGGGGRFHV
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