| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0875 |
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| Symbol | popC |
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| ID | 1223182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1102522 |
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| End bp | 1105596 |
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| Gene Length | 3075 bp |
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| Protein Length | 1024 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637240735 |
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| Product | POPC protein |
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| Protein accession | NP_522436 |
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| Protein GI | 17549096 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.287457 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0107238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCGGG ATACGCCACA AACGGTTCCG GGGCATTCGC CCTTTTGGCC CCTGTTTTTT
TTCACCCACA ACAACAAGCG TGAGGCACGA CATGACCTTG CGCGACTTAG CCTGACGCTC
ATGCCTATCC TTCCACGCCT ATTCCATCGA ACATCGCGCA CGTCGTCCGC CGACACGCAA
CGCGACGCCA GGACACCGCC GAACGCCTCG CCGCTGCATG GAGAACCGGG ACGGACCCCG
CGCTCAAGAG GGGAGCTTGG CCGCAACCTG CGTCTGCGCA GCAACGCGCA GACGAGCGGC
ACCCCTGGCA CTCCGGCACG CCCCCAGATC CGCGCCTCGG CGTCGCGCAC CGCACCGAGC
ACCCCACAGC ACCCGCAGGG AACCGAAGGC ACTCGCACGG TTCCGAACAG CCCGTTGCAC
AACGATGCTC GCGTGTTCAG AGAACGCGCA GACCACACCG GGTTGTCGGC CTGGCGCACC
GAGATGCTGA CCCGGTTTAT CGAACACAGC CGCAAACACG GTTTGGCCAA CGACTTCGAG
CAGGTGCGGG TCTACGACCG ACTGTCGCGA GCCGTCGACC ACCTGAAGAG CGTCCTCCGG
ATGAGCGGCG ACAGTGTCCA ATTGAAGTCG CTCCCCGTCC CCGAGCTGCC GGATGTCACC
TTTGAGATCG CCCACCTGAA GAACCTCGAG ACCGTGGATT GCGATCTGCA CGCGTTGCCT
GCCACGCTGG AAAATCTGTT CTTGCTGGAG ACCTTGTCCT TGAAGGGCGC CAAGAACTTC
AAGGCCCTGC CCGATGCCGT CTGGCGATTG CCCGCACTGC AAGAGCTGAA GCTCTCGGAA
ACGGGCCTAA AATCCCTGCC GCCGGTCGGA GGCGGATCCG CACTGCAGCG GCTTACGATT
GAAGATTCGC CGCTCGAACA GCTTCCGGCC GGATTCGCTG ACCTCGACCA ACTTGCCAGC
CTGTCGCTGT CGAACACGAA GCTGGAGAAA CTGTCTTCCG GCATCGGGCA GTTGCCGGCG
CTGAAGTCCC TCTCCCTGCA GGACAATCCA AAGCTGGAGC GGTTGCCCAA GTCGCTCGGG
CAGGTGGAAG AGCTCACGCT CATCGGCGGC CGCATTCATG CGCTGCCGTC GGCGAGCGGG
ATGTCGTCGT TGCAAAAGCT CACGGTGGAC AACTCGTCGC TGGCAAAGCT GCCGGCCGAC
TTCGGTGCGC TCGGCAATCT GGCCCACGTG TCGCTGTCGA ATACGAAGTT GCGCGATCTG
CCCGCGAGCA TCGGGAACTT GTTCACGCTG AAGACGCTGT CATTGCAGGA CAACCCCAAG
CTGGGGTCGC TGCCCGCTTC GTTCGGGCAA CTGTCCGGTC TTCAAGAGCT GACACTCAAC
GGCAACCGCA TTCATGAGCT GCCATCGATG GGCGGGGCAT CGTCATTGCA GACGCTCACG
GTGGATGACA CCGCGCTGGC CGGGTTGCCG GCCGACTTCG GCGCGCTCCG CAATCTGGCC
CATCTGTCCC TGTCGAATAC ACAGCTGCGA GAGCTGCCTG CAAACACCGG GAACCTGCAC
GCGCTGAAAA CGCTGTCGTT GCAAGGCAAC CAGCAACTGG CGACCTTGCC CAGCTCGCTT
GGGTATTTGT CAGGGCTGGA GGAGCTGACG CTCAAGAACA GCAGCGTCAG CGAGCTGCCA
CCGATGGGCC CGGGCTCCGC ACTGAAGACG CTCACGGTGG AAAATTCACC TCTGACGTCG
ATTCCGGCCG ACATCGGTAT CCAGTGCGAG CGGCTGACGC AGTTGTCGCT GTCGAACACG
CAACTGCGCG CCCTGCCCTC CAGCATCGGC AAGTTGTCGA ATCTGAAGGG GCTGACGCTG
AAGAACAACG CCCGCCTTGA ATTGCTGTCC GAAAGCGGAG TCCGCAAGCT GGAGTCGGTG
AGGAAGATCG ACCTGTCGGG TTGCGTGAGG CTCACCGGAC TGCCCTCTTC GATTGGAAAG
CTGCCAAAGC TGAGGACACT CGACTTGAGC GGCTGCACCG GCCTGAGCAT GGCAAGCCTG
CCGCGTTCGC TCGTGTTGCC GCGCGATGGG CTGAACGTCA TCTTTCCGGA GCACCTGAAA
ACCGACGTGG GCAATGCACG TATTCAACAG AATCCACGTG CCCGGTTGCT GGAAGGCCAT
CTGGAGCGCC AGAACGAGGC GATGAATCAC GCCATGTTCG GGGACGACGA GTCGGTGGGG
TCGATGACGA GTGTGCCGGA CAATGAAGCC GGGGTCGTGT CGATGGCCTT CCATGCCAAA
CATGCATACA AGCGCCTCGA GAGGCTCCGG CAGGAGGCCG GCAGCAGTAT GGCCGCACCG
ATGAGGAACA ACGATGCGGA ATCCATGCGC AGAGCCTTGG CCTATGCGTT CAGGAGCATG
TCCGATCTGC CGACGTTCAA GAAACTGGAT AACGCGGCAC GCTCGCTGTC TTATGAGGTC
CAGGAGCAAC TGGCCGATCT GGTGGCCGCG CCCGTGGGGC AGAAACTGGT CAAGGCGATC
GCCGAGGGTG CCTATGGCGC GGGGCGGGAT GCCCGGGCGA TCGAGCAGAT GTTGCCGGAG
CTGGCAACGC GGATCGCCAA CCATCCGGAG ATCCAGCAAC TGCGGGAACA GGCCAAGCGA
TACCCGAGCA GCCTGCCTCC GGAGAAGCTC GCCGCAAAAC TAACGCCCTT GATCCAGCCG
CTCTGGGACG GCACACGGGC GGTGGCACCG ATGCCAGGCC AACTGCGTCA AGCGCTGCAA
GACCTGCTCG TCACCGCTGA GGGGCGTCAA CTGGCCAGCG AGATCGACCG GGCGGCGCAC
AGTCACCGCG CGGGGGATGA GGGGAAGGCG CTGCGTGGTC TCCTGCCCGT TCTGGCCGCC
AAGATCGGCT CGGACCCTCG CGTCGTTCGG GTGCGGGAAT TCGTGAGCCG GCACACGTTC
GGCAGTCCGC AACAGCGCGC GGAAAGCCTT GCGCAGACGC TGACCCCGGT CGTTCAGGAA
CTCTGGGCGC AAACGCAAGC CGAGGTGGCG AAGCAAGGCC AGACGCCCGC GGCAAGTCCG
TCGAGGCAGC GTTGA
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| Protein sequence | MPRDTPQTVP GHSPFWPLFF FTHNNKREAR HDLARLSLTL MPILPRLFHR TSRTSSADTQ
RDARTPPNAS PLHGEPGRTP RSRGELGRNL RLRSNAQTSG TPGTPARPQI RASASRTAPS
TPQHPQGTEG TRTVPNSPLH NDARVFRERA DHTGLSAWRT EMLTRFIEHS RKHGLANDFE
QVRVYDRLSR AVDHLKSVLR MSGDSVQLKS LPVPELPDVT FEIAHLKNLE TVDCDLHALP
ATLENLFLLE TLSLKGAKNF KALPDAVWRL PALQELKLSE TGLKSLPPVG GGSALQRLTI
EDSPLEQLPA GFADLDQLAS LSLSNTKLEK LSSGIGQLPA LKSLSLQDNP KLERLPKSLG
QVEELTLIGG RIHALPSASG MSSLQKLTVD NSSLAKLPAD FGALGNLAHV SLSNTKLRDL
PASIGNLFTL KTLSLQDNPK LGSLPASFGQ LSGLQELTLN GNRIHELPSM GGASSLQTLT
VDDTALAGLP ADFGALRNLA HLSLSNTQLR ELPANTGNLH ALKTLSLQGN QQLATLPSSL
GYLSGLEELT LKNSSVSELP PMGPGSALKT LTVENSPLTS IPADIGIQCE RLTQLSLSNT
QLRALPSSIG KLSNLKGLTL KNNARLELLS ESGVRKLESV RKIDLSGCVR LTGLPSSIGK
LPKLRTLDLS GCTGLSMASL PRSLVLPRDG LNVIFPEHLK TDVGNARIQQ NPRARLLEGH
LERQNEAMNH AMFGDDESVG SMTSVPDNEA GVVSMAFHAK HAYKRLERLR QEAGSSMAAP
MRNNDAESMR RALAYAFRSM SDLPTFKKLD NAARSLSYEV QEQLADLVAA PVGQKLVKAI
AEGAYGAGRD ARAIEQMLPE LATRIANHPE IQQLREQAKR YPSSLPPEKL AAKLTPLIQP
LWDGTRAVAP MPGQLRQALQ DLLVTAEGRQ LASEIDRAAH SHRAGDEGKA LRGLLPVLAA
KIGSDPRVVR VREFVSRHTF GSPQQRAESL AQTLTPVVQE LWAQTQAEVA KQGQTPAASP
SRQR
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